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The map label for this gene is yciR [C]

Identifier: 114797598

GI number: 114797598

Start: 482786

End: 484963

Strand: Direct

Name: yciR [C]

Synonym: HNE_0491

Alternate gene names: 114797598

Gene position: 482786-484963 (Clockwise)

Preceding gene: 114799058

Following gene: 114798571

Centisome position: 13.03

GC content: 57.48

Gene sequence:

>2178_bases
ATGACAACATATCATGGAAGTCTGTCCGTGCTGAGCGGGCATGAGGGCATCCATCCCGCCGGACGCGATGGATTGTTTGA
GCACCATATCTGGCACCATGATCTTGGCCTCGTCTTTCTGGCGGCTCTCATCTGCCTTGCGGGCTCCTGGGTGACGTTGC
AACTGTTCCGGCGCGCGGCCGGTGTTTCCGGAGCCCAGCGTGTGGGATGGCATATCCTGACGGCTGTGGCGGCCGGAGCG
GCGATCTGGTGCACGCACTTTATTGCTATGCTCGGCTTTGATCCCGGTGTGCCTTTTTCGTTTGATCCTATACTGACCAT
TCTGTCCTTGATCGTTGCCATGATTGGTGCCGCGGCCGGTTTTTCATTCGCTACAGCGCGCATGAAGTTCGCGCCGCTCC
TGGGGGGCGCAATCGTCGGGCTTGGAACAGCGGCGATGCACTACACAGGAATGATGGGTTATTCCGTGCAGGGTATTGTG
ACATGGAATATGCCGCTTCTGGCTCTTTCGATCATCTTCTCTGTTTTCCTGTCAGCGTCCGCCGTTCATTTGATGTTGCG
CGCTGCCAATACGCGAAAGCAGATTATAGCCGCAGCGTTTCTTGTGGCTGCCATCGTGATGCTGCACTTCACGGGCATGG
CCGCATCGCATTTCGAGCCCCTCGGCGTGGTTCTCGCTGAGCCTATGCAGGACGCTGTCAAGGCGTTGGCATTCGCGATC
GCAGGAGTCGGGTTCCTGATCATCGGCGCCGGCGTGGCCAGCTATCTGATTGATGCACGTGTACGGAGCGAATCGTATGA
ACAGCTGCGCCATATGGCGGTGACTGACAGCCTTACAGGGCTTCCCAACCGGGTGAGTTTCACAGGGCGCCTGGATCATG
AGATCGACACCGCAAAGGCGCGGGGGCTCAAAGTAGCCCTGATCGGCATCGACCTGGACCGCTTCAAGGAGATCAATGAT
CTACGGGGTCATGGAGCCGGCGATGATGTGCTGCGAACGCTTGCGGCACGCATGCGCGCGTTGCTGCGCGAAGGAGAATT
TGTTGCCCGGCTGGGCGGAGACGAGTTTGCGGCCGTCAAGCGGATGCAAAATGGCGCAGACGTTTCAGACTTTCTCGTGC
GTCTTGAAGCGGCCCTTTATGAGCCAATTGCGCTGGACGAATTCCATGTGACTCCCGGCGCGAGCCTGGGTGTGTCGATC
TATCCTGATGACGCCACAGACAAGAACGCTCTGCTTGGAAATGCAGACCTCGCCATGTATCGCGCAAAGTCGACACCGGG
CACAAATGTCGCCTTCTATGATCCTTCCATGGATGAGGTCGTCCGGAAGCGGAAAAATCTTGCCAACGATTTGCGGCAGG
CATTTGACCGCGATGAGCTGGACCTGCATTTTCAGGTTCAGAAATCTGTTTCCACGGGAGACATCCGGGGTTACGAGGCT
TTGGTTCGTTGGAAGCATCCGGAGCATGGAGATATATCTCCGGAAGTGTTCATTCCGATTGCGGAAGAGTATGGACTGAT
CCTGCAGCTTGGAGAGTGGGTGCTACGCAAGGCCTGCGCGAGAGCGGCGAGCTGGCTGCCGCCTTACAAGGTCGCGGTGA
ACGTTTCCCCCCTGCAATTCGCGCATGCCGATTTGCCCAAAGTGATCCTTGAAATACTGGTCGAGACTGGCCTTGCGGCC
AATCGGCTGGAGATTGAGCTGACGGAAACCGCAATCTTTGCGGACAAGGAGCGCTCGCTTCATATGCTCCGCCAGATCAA
AGGCATGGGCGTGACGATTGCGCTGGATGATTTTGGAACGGGCTATTCTTCGCTCGATACCCTGCGCGCATTTCCGTTCG
ACAAGATCAAGCTCGACAAGTCCTTTATCGACCATGTGGACTCCAACGAACAGACCGCCGCCATGGTACGGGCCGTGCTG
GCATTGGGCCGCAGCTTGAAAATTCCGGTGCTCGCTGAGGGCATCGAGAATTCCGGGCAGCTGGCCATGTTGACCTTTGA
GGGGTGCGATGAGGCGCAAGGCTTCCTGCTTGGCCGGCCGATGTCTATCGACCGGATTGTCAGCGCCGGACATCTCAGCC
TGAAGCCCGTAATGTCGCAGACCGAACCTGTGGAAGATCGCCGGAAACCTATTGAAGACAACGTGCCCGAAAAGCCCGGT
AAAGCGGCGGCGTCCTGA

Upstream 100 bases:

>100_bases
AATTGCTTTTTAAGGTAGAAATTCCTGTGGCGCCTGAACTAACAAGGCGGTAACCCTTGTGCGGCAAACAGGTTCCAGCA
GAATGCTGGAGCCCTGTCTG

Downstream 100 bases:

>100_bases
TCAGGGCGCTGCGGCGGGCAGAACGTCTCGGTTGGCGGCGACCCCGCGCAGGAAGGGCAGAAACGCCAGCGCAGTGAGAA
TGGCCGCGAGCAGGAATGCT

Product: signalling protein N terminal repeat/GGDEF/EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 725; Mature: 724

Protein sequence:

>725_residues
MTTYHGSLSVLSGHEGIHPAGRDGLFEHHIWHHDLGLVFLAALICLAGSWVTLQLFRRAAGVSGAQRVGWHILTAVAAGA
AIWCTHFIAMLGFDPGVPFSFDPILTILSLIVAMIGAAAGFSFATARMKFAPLLGGAIVGLGTAAMHYTGMMGYSVQGIV
TWNMPLLALSIIFSVFLSASAVHLMLRAANTRKQIIAAAFLVAAIVMLHFTGMAASHFEPLGVVLAEPMQDAVKALAFAI
AGVGFLIIGAGVASYLIDARVRSESYEQLRHMAVTDSLTGLPNRVSFTGRLDHEIDTAKARGLKVALIGIDLDRFKEIND
LRGHGAGDDVLRTLAARMRALLREGEFVARLGGDEFAAVKRMQNGADVSDFLVRLEAALYEPIALDEFHVTPGASLGVSI
YPDDATDKNALLGNADLAMYRAKSTPGTNVAFYDPSMDEVVRKRKNLANDLRQAFDRDELDLHFQVQKSVSTGDIRGYEA
LVRWKHPEHGDISPEVFIPIAEEYGLILQLGEWVLRKACARAASWLPPYKVAVNVSPLQFAHADLPKVILEILVETGLAA
NRLEIELTETAIFADKERSLHMLRQIKGMGVTIALDDFGTGYSSLDTLRAFPFDKIKLDKSFIDHVDSNEQTAAMVRAVL
ALGRSLKIPVLAEGIENSGQLAMLTFEGCDEAQGFLLGRPMSIDRIVSAGHLSLKPVMSQTEPVEDRRKPIEDNVPEKPG
KAAAS

Sequences:

>Translated_725_residues
MTTYHGSLSVLSGHEGIHPAGRDGLFEHHIWHHDLGLVFLAALICLAGSWVTLQLFRRAAGVSGAQRVGWHILTAVAAGA
AIWCTHFIAMLGFDPGVPFSFDPILTILSLIVAMIGAAAGFSFATARMKFAPLLGGAIVGLGTAAMHYTGMMGYSVQGIV
TWNMPLLALSIIFSVFLSASAVHLMLRAANTRKQIIAAAFLVAAIVMLHFTGMAASHFEPLGVVLAEPMQDAVKALAFAI
AGVGFLIIGAGVASYLIDARVRSESYEQLRHMAVTDSLTGLPNRVSFTGRLDHEIDTAKARGLKVALIGIDLDRFKEIND
LRGHGAGDDVLRTLAARMRALLREGEFVARLGGDEFAAVKRMQNGADVSDFLVRLEAALYEPIALDEFHVTPGASLGVSI
YPDDATDKNALLGNADLAMYRAKSTPGTNVAFYDPSMDEVVRKRKNLANDLRQAFDRDELDLHFQVQKSVSTGDIRGYEA
LVRWKHPEHGDISPEVFIPIAEEYGLILQLGEWVLRKACARAASWLPPYKVAVNVSPLQFAHADLPKVILEILVETGLAA
NRLEIELTETAIFADKERSLHMLRQIKGMGVTIALDDFGTGYSSLDTLRAFPFDKIKLDKSFIDHVDSNEQTAAMVRAVL
ALGRSLKIPVLAEGIENSGQLAMLTFEGCDEAQGFLLGRPMSIDRIVSAGHLSLKPVMSQTEPVEDRRKPIEDNVPEKPG
KAAAS
>Mature_724_residues
TTYHGSLSVLSGHEGIHPAGRDGLFEHHIWHHDLGLVFLAALICLAGSWVTLQLFRRAAGVSGAQRVGWHILTAVAAGAA
IWCTHFIAMLGFDPGVPFSFDPILTILSLIVAMIGAAAGFSFATARMKFAPLLGGAIVGLGTAAMHYTGMMGYSVQGIVT
WNMPLLALSIIFSVFLSASAVHLMLRAANTRKQIIAAAFLVAAIVMLHFTGMAASHFEPLGVVLAEPMQDAVKALAFAIA
GVGFLIIGAGVASYLIDARVRSESYEQLRHMAVTDSLTGLPNRVSFTGRLDHEIDTAKARGLKVALIGIDLDRFKEINDL
RGHGAGDDVLRTLAARMRALLREGEFVARLGGDEFAAVKRMQNGADVSDFLVRLEAALYEPIALDEFHVTPGASLGVSIY
PDDATDKNALLGNADLAMYRAKSTPGTNVAFYDPSMDEVVRKRKNLANDLRQAFDRDELDLHFQVQKSVSTGDIRGYEAL
VRWKHPEHGDISPEVFIPIAEEYGLILQLGEWVLRKACARAASWLPPYKVAVNVSPLQFAHADLPKVILEILVETGLAAN
RLEIELTETAIFADKERSLHMLRQIKGMGVTIALDDFGTGYSSLDTLRAFPFDKIKLDKSFIDHVDSNEQTAAMVRAVLA
LGRSLKIPVLAEGIENSGQLAMLTFEGCDEAQGFLLGRPMSIDRIVSAGHLSLKPVMSQTEPVEDRRKPIEDNVPEKPGK
AAAS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=418, Percent_Identity=36.6028708133971, Blast_Score=275, Evalue=9e-75,
Organism=Escherichia coli, GI87081921, Length=431, Percent_Identity=31.322505800464, Blast_Score=235, Evalue=7e-63,
Organism=Escherichia coli, GI226510982, Length=447, Percent_Identity=26.8456375838926, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI1787055, Length=252, Percent_Identity=35.3174603174603, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=30.0411522633745, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=32.0987654320988, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=32.8063241106719, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=30.8943089430894, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87082096, Length=467, Percent_Identity=25.0535331905782, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=31.8725099601594, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=30.6772908366534, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=27.6422764227642, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788381, Length=458, Percent_Identity=25.1091703056769, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=38.1818181818182, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1786584, Length=226, Percent_Identity=28.3185840707965, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=35.5828220858896, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87081974, Length=134, Percent_Identity=31.3432835820896, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=34.5454545454545, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI145693134, Length=209, Percent_Identity=30.1435406698565, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=36.25, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=27.8409090909091, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 78502; Mature: 78371

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTYHGSLSVLSGHEGIHPAGRDGLFEHHIWHHDLGLVFLAALICLAGSWVTLQLFRRAA
CCEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GVSGAQRVGWHILTAVAAGAAIWCTHFIAMLGFDPGVPFSFDPILTILSLIVAMIGAAAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
FSFATARMKFAPLLGGAIVGLGTAAMHYTGMMGYSVQGIVTWNMPLLALSIIFSVFLSAS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHH
AVHLMLRAANTRKQIIAAAFLVAAIVMLHFTGMAASHFEPLGVVLAEPMQDAVKALAFAI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
AGVGFLIIGAGVASYLIDARVRSESYEQLRHMAVTDSLTGLPNRVSFTGRLDHEIDTAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHH
RGLKVALIGIDLDRFKEINDLRGHGAGDDVLRTLAARMRALLREGEFVARLGGDEFAAVK
CCEEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHH
RMQNGADVSDFLVRLEAALYEPIALDEFHVTPGASLGVSIYPDDATDKNALLGNADLAMY
HHHCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEECCCCCCCCCCEECCCCEEEE
RAKSTPGTNVAFYDPSMDEVVRKRKNLANDLRQAFDRDELDLHFQVQKSVSTGDIRGYEA
EECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHH
LVRWKHPEHGDISPEVFIPIAEEYGLILQLGEWVLRKACARAASWLPPYKVAVNVSPLQF
HHCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
AHADLPKVILEILVETGLAANRLEIELTETAIFADKERSLHMLRQIKGMGVTIALDDFGT
HHCCHHHHHHHHHHHCCCCCCEEEEEEEHHEEECCCHHHHHHHHHHCCCCEEEEEECCCC
GYSSLDTLRAFPFDKIKLDKSFIDHVDSNEQTAAMVRAVLALGRSLKIPVLAEGIENSGQ
CHHHHHHHHCCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCC
LAMLTFEGCDEAQGFLLGRPMSIDRIVSAGHLSLKPVMSQTEPVEDRRKPIEDNVPEKPG
EEEEEECCCCCCCCEEECCCCCHHHHHCCCCCEECHHHCCCCCCHHHCCCCCCCCCCCCC
KAAAS
CCCCC
>Mature Secondary Structure 
TTYHGSLSVLSGHEGIHPAGRDGLFEHHIWHHDLGLVFLAALICLAGSWVTLQLFRRAA
CEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH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CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]