Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114563820

GI number:

Start: 3184412

End: 3186556

Strand: Reverse

Name: Not Available

Synonym: Sfri_2654

Alternate gene names: NA

Gene position: NA

Preceding gene: 114563823

Following gene: 114563819

Centisome position: NA

GC content: NA

Gene sequence:

>2145_bases
ATGCACAAGAATACGATAAGCCAAGAGGTTAATGAGTTAGTTTTAGATGCGACTAATGTTGGCGTCTGGGATTGGCGTGT
TGAAAATGATGGTCTTGTTTGTAATGAACGTTGGGCTGAGATTATAGGGTATACCTTATCGGAGTTAATGCCTGTTGATT
ACCAAACTTGGCTAGATGTATTACACCCAGATGATTTGCCTAAGGCAATTAAAAATTATGATTACCACTGTCAAGGCCAA
AGCGAACTTTGTGAGTTAGAAGTTCGTTTAAAACACAAAAGCGGTCATTATGTTTGGGTATTGTCTACAGGTAAAGCTAT
TGCATGGGATGTTGAAGGCAAACCGACACGAATGATTGGCATGCACCAAGAAATAACCTTTCGTAAGAGGCAGGAAGAAC
TACTTGCAACCACAACCGAGTTATTGAGAGAATCTCAAGAGATAGGCAAGCTAGGTGGCTGGCAACTCAACTTGCATAAC
GGTGACTTGATTTGGACAGATGAAACTTACCGAATTTATGAAACAACTCCGCAAGAATATATTCCTACCGTTGAAATGGG
GGTAAGTTATTTATTACCCGATTCCAAAAAATTATTCCAAGAAGCGCTTGATGCTGCTATTCAACTTGGCGAAGAGTATG
ACTTAGAGCTTGAAACTTATACCACGAAAGGACAAAAGATTGACGTTAGAACGACCTGTCATGTTACATATGTCGATGGT
GTTGCTGAAAAATTAAGTGGTATATTTCAAGACATTACCGACGAAAAAAATAATCAACGCAAACTTGAAAAAAGTAATCA
GGTATTAAAAGAAGTAAATGAGAAGTTAAAGTTTGCAGCGAATTATGATCCACTTACACATTTGCCAAACAGAAATTTGT
TAGCTGATCGAATGCAGCAAGCGCTTATCAAAGCGCAGCGTAATAGCAAACAAATAGCTATAGCCTTCCTAGACTTGGAT
GGCTTTAAAGAGGTAAATGATGCTTACGGTCATGATATAGGAGATGAGTTCCTTTGCCTTATTGCAAATAGGTTTAAAAC
TGCAATACGAGAGGATGATACTCTTGCCAGGTTTGGTGGCGATGAGTTTGTTTTGATTCTTGATGATTTAGACAGTCATC
AAGAAGCATCAGAAATATTACAGCGAATACTTTCTTCAATTACAGAAATATTTATTATTGAAAATAAGCGTCTTTCTATA
ACGGTGAGTATTGGAGTGACGTTTTTCCCGCAGGATAATAGTCACGCAGACATACTTATTCGTCATGCTGATCAGGCTAT
GTATAGGGCTAAAGAGCAGGGAAAGAATTGCATTCATGAATTTGACTTTGAAAATGATGTAGCGATAAAACTCCAGTATC
GAGAGTTAGAATACATAATCAATGGATTTAATAACAATGAGTTTTTGTTATTCTACCAACCAAAAATCAATATGGAAAGT
AATGAAATCATAGGTTTAGAGGCCCTTATTCGTTGGCAACATCCGACAGAAGGTCTTTTGTCACCATTTCGCTTTTTGCC
CTACATTGAAGAAGAACCTCTAGCAATTGAGTTAGGTAAATGGGTAATTGACCAAGCAATAAAGCAGCATAATGAATGGC
GACGCTTAGGAATAGTTATACCTATCAGTGTCAATGTCAGTCCATTACAACTTCAGCATGAAGATTTCATTAAACAATTA
AATGAAATCTTATTTCTCAACACTAGTTTTCAAGCGGGTCAGCTTGAATTTGAAATTTTAGAATCCAGTATTATTAAAGA
TACTCAGCACATCGCTGAGGTTATTAGTCAATGTAAACAGTTAGGGATACGTTTTTCGTTAGATGATTTTGGTACGGGGT
TTTCATCTTTAAGCTATTTGAGAAAGTTAAAGACTGATGTTATAAAAATAGATCAATCTTTTGTCATTGACATGTTAGAT
GATATGGATGATCAAGCCATTGTAAAAAGTGTCATTGAATTATCGAAGACCTTCGGTCGTTCTGTGATAGCAGAGGGGGT
TGAAACCCAAGAGCATGGTCGGCAATTACTTAAAATGGGATGTCAATTAGCACAAGGTTTCGGTATAGCAAGACCAATGC
CAGCAAGTTCAATCCCTGAGTGGATTAATTTATGGAATGCGTCTCCTCCTTGGATTTGTAAATGA

Upstream 100 bases:

>100_bases
AAACAGTAATAAGTAGACTTTTGTGGTTAATTAAAAGGCAAAAGTTCTTATTTACAAAAGCTGGTTAAATCCATAATTTT
TCCCAAACAGTATAAAGGCC

Downstream 100 bases:

>100_bases
GCTTTATGAGTTAGTCTTTAGTGTATGTTGATCTTTGTGTGAAAGCATATGAAAGCTATTTTTCAACAACTGTAACCGTC
ATCAGCGCTTATAAAGTAGT

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>714_residues
MHKNTISQEVNELVLDATNVGVWDWRVENDGLVCNERWAEIIGYTLSELMPVDYQTWLDVLHPDDLPKAIKNYDYHCQGQ
SELCELEVRLKHKSGHYVWVLSTGKAIAWDVEGKPTRMIGMHQEITFRKRQEELLATTTELLRESQEIGKLGGWQLNLHN
GDLIWTDETYRIYETTPQEYIPTVEMGVSYLLPDSKKLFQEALDAAIQLGEEYDLELETYTTKGQKIDVRTTCHVTYVDG
VAEKLSGIFQDITDEKNNQRKLEKSNQVLKEVNEKLKFAANYDPLTHLPNRNLLADRMQQALIKAQRNSKQIAIAFLDLD
GFKEVNDAYGHDIGDEFLCLIANRFKTAIREDDTLARFGGDEFVLILDDLDSHQEASEILQRILSSITEIFIIENKRLSI
TVSIGVTFFPQDNSHADILIRHADQAMYRAKEQGKNCIHEFDFENDVAIKLQYRELEYIINGFNNNEFLLFYQPKINMES
NEIIGLEALIRWQHPTEGLLSPFRFLPYIEEEPLAIELGKWVIDQAIKQHNEWRRLGIVIPISVNVSPLQLQHEDFIKQL
NEILFLNTSFQAGQLEFEILESSIIKDTQHIAEVISQCKQLGIRFSLDDFGTGFSSLSYLRKLKTDVIKIDQSFVIDMLD
DMDDQAIVKSVIELSKTFGRSVIAEGVETQEHGRQLLKMGCQLAQGFGIARPMPASSIPEWINLWNASPPWICK

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA