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The map label for this gene is ccmF [H]

Identifier: 114331624

GI number: 114331624

Start: 1722434

End: 1724479

Strand: Reverse

Name: ccmF [H]

Synonym: Neut_1638

Alternate gene names: 114331624

Gene position: 1724479-1722434 (Counterclockwise)

Preceding gene: 114331625

Following gene: 114331623

Centisome position: 64.8

GC content: 45.94

Gene sequence:

>2046_bases
ATGATTCCGGAACTTGGTAACTTCGCCCTCATACTTGCAATGTTGCTGGCCTTGATTCAGGGAACTTTGCCCCTTATTGG
TGCGACACGTGGAATACCTTCGTGGGTAGCCTTGGCGCGTCCAGTCACGCAGGGTCAGTTTGTATTTACTACCATTGCTT
TTGGCTGTCTCGCCTATTCATTCTTGAACAATGATTTTTCTGTATTGAATGTGGCGTCTCATTCAAATTCAGATTTACCT
TTACATTTTCGTTTTGCTGCCACGTGGGGATCTCACGAAGGTTCTCTATTGCTGTGGGTAACCATACTTGCCGGCTGGTC
GGTTGCTGTGAGTGTTTTCAGTCGCCAATTACCGGATGACATGGTGGCTCGTGTTTTGGCTGTTTTAGGATTGGTTAGTG
CTGGTTTTCTGTTGTTTCTTCTGTTTACTTCTAATCCATTTGATCGATTATTACCTGCCGCAATCGAAGGGAATGATCTG
AACCCATTGTTGCAAGATCCTGGAATGGTTATGCATCCACCCATGTTGTATATGGGGTATGTTGGCTTTTCAGTTGCATT
TGCATTTGCAATTGCAGCACTGCTTAGTGGGCAGTTGGATGCGGCTTGGGCAAGATGGTCACGTCCCTGGACGATTGTTG
CCTGGATTTTCCTGACTATTGGCATCATGTTTGGTAGCTGGTGGGCATATTATGAACTTGGCTGGGGTGGCTGGTGGTTC
TGGGATCCAGTTGAGAATGCATCATTTATGCCTTGGTTGGTGGGTACAGCATTGATTCATTCACTGGCGGTAACTGAGAA
ACGTGGAAGTTTTAAGAGCTGGACGATATTATTGGCAATCACTGCCTTTTCATTAAGTTTGTTAGGAACCTTCCTGGTAC
GTTCCGGGGTTCTGACTTCTGTGCATGCTTTTGCGACTGATCCGGCACGTGGGATATTTATCCTGATCTATCTATCGCTG
GTAGTAGGATGTTCATTAACACTGTTTGCATGGCGCGCTTCCAAAGTGGGTTTGGGGGGTAACTTTGAGATTGTCTCACG
TGAAACTACCTTACTTGCTAATAATGTATTGCTGCTAGTTGCGGCGGGCAGCGTGGTATTAGGCACGCTTTATCCTCTTC
TTATTGATGCGCTTAATTTAGGGAAAATTTCTGTTGGCCCTCCCTATTTTGAGGCAGTTTTTGTGCCTTTAATGGCACCA
GCCATTTTTCTGATGGGGCTGGGGCCAGTTGCTCGTTGGAAGAAAGCTAGCCTGCCCGCCCTGACGGTGCTGTTGAGATG
GGCATTTGTGGTGAGCGTGGTGGCTGCAGGAATTATGCCGTTCATTATGGGTGAATGGAAACCTATGGTCAGTTTTGGGT
TACTACTGGCTTTCTGGGTTGTGACCAGTATATTTGTCGGTATTAGGCACCGACTCCAGAATAGTGGGGAAGGCGGGTTG
ATCACTAAGTTGGTGAAACAACCAAGGAGCTATTATGGTATGCATTGCGCACACTTCGGTATCGCAGTATTTATCATTGG
TGTTACGCTGGTTAACGGCTATGAAACTGAAAAAGATGTGCGTATGGAAGTAGGTAGTACCGTAACACTTAAAGATTACA
CATTTCAATTTAATGGAACGAAATCGGTTCCTGGCCCTAACTACAATGCATCTCAAGGACAGATTGAGGTGTTCAGAGAG
GGCAAGAAAATAAGTGAGCTTTTCCCTGAGAAAAGAACTTACACCGCTTCAGGTATGCCGATGACCGAGGCTGATGTTGA
TATGGGGTTTCTGCGTGATCTGTATGTGGCACTGGGTGAACCATTGGAGAATGATGCCTGGATAGTACGGGTTTATCACA
AACCTTTTGTTAACTGGATCTGGTTTGGTTGCATATTGATGGCTCTGGGAGGAGCTCTATCTGTCAGTGATCGGCGTTAC
CGCCTTGCTATTAATAAAAAATATCGCCGCAAAGCAGCTGAAACACCTGGTGCTGCAGATATACCTGCCAAAGATATTAT
GGTGACCAATTCTGTTACTCTTTCGGAGGAAGGTGGTAAAGCATGA

Upstream 100 bases:

>100_bases
GAAGCTGCCGCTGCATTGGAACAAGCTGCCAAAGCACAGAAAACCTCTTTTACACAGTGAGTTTTATCCCGTAATTTAAA
ACAAGGAATAATTTTAAACC

Downstream 100 bases:

>100_bases
TGCGTTTCCTGCTGCCTCTCGCGATATTTGTAATATTAGTAATCTTTCTAGGAATTGGTTTGACCTTGAATCCGCGTCAA
GTGCCATCTCCATTAATAGA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MIPELGNFALILAMLLALIQGTLPLIGATRGIPSWVALARPVTQGQFVFTTIAFGCLAYSFLNNDFSVLNVASHSNSDLP
LHFRFAATWGSHEGSLLLWVTILAGWSVAVSVFSRQLPDDMVARVLAVLGLVSAGFLLFLLFTSNPFDRLLPAAIEGNDL
NPLLQDPGMVMHPPMLYMGYVGFSVAFAFAIAALLSGQLDAAWARWSRPWTIVAWIFLTIGIMFGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALIHSLAVTEKRGSFKSWTILLAITAFSLSLLGTFLVRSGVLTSVHAFATDPARGIFILIYLSL
VVGCSLTLFAWRASKVGLGGNFEIVSRETTLLANNVLLLVAAGSVVLGTLYPLLIDALNLGKISVGPPYFEAVFVPLMAP
AIFLMGLGPVARWKKASLPALTVLLRWAFVVSVVAAGIMPFIMGEWKPMVSFGLLLAFWVVTSIFVGIRHRLQNSGEGGL
ITKLVKQPRSYYGMHCAHFGIAVFIIGVTLVNGYETEKDVRMEVGSTVTLKDYTFQFNGTKSVPGPNYNASQGQIEVFRE
GKKISELFPEKRTYTASGMPMTEADVDMGFLRDLYVALGEPLENDAWIVRVYHKPFVNWIWFGCILMALGGALSVSDRRY
RLAINKKYRRKAAETPGAADIPAKDIMVTNSVTLSEEGGKA

Sequences:

>Translated_681_residues
MIPELGNFALILAMLLALIQGTLPLIGATRGIPSWVALARPVTQGQFVFTTIAFGCLAYSFLNNDFSVLNVASHSNSDLP
LHFRFAATWGSHEGSLLLWVTILAGWSVAVSVFSRQLPDDMVARVLAVLGLVSAGFLLFLLFTSNPFDRLLPAAIEGNDL
NPLLQDPGMVMHPPMLYMGYVGFSVAFAFAIAALLSGQLDAAWARWSRPWTIVAWIFLTIGIMFGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALIHSLAVTEKRGSFKSWTILLAITAFSLSLLGTFLVRSGVLTSVHAFATDPARGIFILIYLSL
VVGCSLTLFAWRASKVGLGGNFEIVSRETTLLANNVLLLVAAGSVVLGTLYPLLIDALNLGKISVGPPYFEAVFVPLMAP
AIFLMGLGPVARWKKASLPALTVLLRWAFVVSVVAAGIMPFIMGEWKPMVSFGLLLAFWVVTSIFVGIRHRLQNSGEGGL
ITKLVKQPRSYYGMHCAHFGIAVFIIGVTLVNGYETEKDVRMEVGSTVTLKDYTFQFNGTKSVPGPNYNASQGQIEVFRE
GKKISELFPEKRTYTASGMPMTEADVDMGFLRDLYVALGEPLENDAWIVRVYHKPFVNWIWFGCILMALGGALSVSDRRY
RLAINKKYRRKAAETPGAADIPAKDIMVTNSVTLSEEGGKA
>Mature_681_residues
MIPELGNFALILAMLLALIQGTLPLIGATRGIPSWVALARPVTQGQFVFTTIAFGCLAYSFLNNDFSVLNVASHSNSDLP
LHFRFAATWGSHEGSLLLWVTILAGWSVAVSVFSRQLPDDMVARVLAVLGLVSAGFLLFLLFTSNPFDRLLPAAIEGNDL
NPLLQDPGMVMHPPMLYMGYVGFSVAFAFAIAALLSGQLDAAWARWSRPWTIVAWIFLTIGIMFGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALIHSLAVTEKRGSFKSWTILLAITAFSLSLLGTFLVRSGVLTSVHAFATDPARGIFILIYLSL
VVGCSLTLFAWRASKVGLGGNFEIVSRETTLLANNVLLLVAAGSVVLGTLYPLLIDALNLGKISVGPPYFEAVFVPLMAP
AIFLMGLGPVARWKKASLPALTVLLRWAFVVSVVAAGIMPFIMGEWKPMVSFGLLLAFWVVTSIFVGIRHRLQNSGEGGL
ITKLVKQPRSYYGMHCAHFGIAVFIIGVTLVNGYETEKDVRMEVGSTVTLKDYTFQFNGTKSVPGPNYNASQGQIEVFRE
GKKISELFPEKRTYTASGMPMTEADVDMGFLRDLYVALGEPLENDAWIVRVYHKPFVNWIWFGCILMALGGALSVSDRRY
RLAINKKYRRKAAETPGAADIPAKDIMVTNSVTLSEEGGKA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=650, Percent_Identity=54.6153846153846, Blast_Score=646, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=580, Percent_Identity=40.1724137931035, Blast_Score=360, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 74617; Mature: 74617

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGNFALILAMLLALIQGTLPLIGATRGIPSWVALARPVTQGQFVFTTIAFGCLAYS
CCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
FLNNDFSVLNVASHSNSDLPLHFRFAATWGSHEGSLLLWVTILAGWSVAVSVFSRQLPDD
HHCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHH
MVARVLAVLGLVSAGFLLFLLFTSNPFDRLLPAAIEGNDLNPLLQDPGMVMHPPMLYMGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHCCCCEECCHHHHHHH
VGFSVAFAFAIAALLSGQLDAAWARWSRPWTIVAWIFLTIGIMFGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEEEEECCCCEEE
WDPVENASFMPWLVGTALIHSLAVTEKRGSFKSWTILLAITAFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHAFATDPARGIFILIYLSLVVGCSLTLFAWRASKVGLGGNFEIVSRETTLLANNVLLLV
HHHHCCCCCCHHHHHHHHHHHHHCHHHHEEEECCCCCCCCCEEEEECCCEEHHCCEEEEE
AAGSVVLGTLYPLLIDALNLGKISVGPPYFEAVFVPLMAPAIFLMGLGPVARWKKASLPA
ECCHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHH
LTVLLRWAFVVSVVAAGIMPFIMGEWKPMVSFGLLLAFWVVTSIFVGIRHRLQNSGEGGL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
ITKLVKQPRSYYGMHCAHFGIAVFIIGVTLVNGYETEKDVRMEVGSTVTLKDYTFQFNGT
HHHHHHCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEEEEECCC
KSVPGPNYNASQGQIEVFREGKKISELFPEKRTYTASGMPMTEADVDMGFLRDLYVALGE
CCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCC
PLENDAWIVRVYHKPFVNWIWFGCILMALGGALSVSDRRYRLAINKKYRRKAAETPGAAD
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECHHHHHHHCCCCCCCC
IPAKDIMVTNSVTLSEEGGKA
CCCCCEEEECCEEECCCCCCC
>Mature Secondary Structure
MIPELGNFALILAMLLALIQGTLPLIGATRGIPSWVALARPVTQGQFVFTTIAFGCLAYS
CCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
FLNNDFSVLNVASHSNSDLPLHFRFAATWGSHEGSLLLWVTILAGWSVAVSVFSRQLPDD
HHCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHH
MVARVLAVLGLVSAGFLLFLLFTSNPFDRLLPAAIEGNDLNPLLQDPGMVMHPPMLYMGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHCCCCEECCHHHHHHH
VGFSVAFAFAIAALLSGQLDAAWARWSRPWTIVAWIFLTIGIMFGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEEEEECCCCEEE
WDPVENASFMPWLVGTALIHSLAVTEKRGSFKSWTILLAITAFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHAFATDPARGIFILIYLSLVVGCSLTLFAWRASKVGLGGNFEIVSRETTLLANNVLLLV
HHHHCCCCCCHHHHHHHHHHHHHCHHHHEEEECCCCCCCCCEEEEECCCEEHHCCEEEEE
AAGSVVLGTLYPLLIDALNLGKISVGPPYFEAVFVPLMAPAIFLMGLGPVARWKKASLPA
ECCHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHH
LTVLLRWAFVVSVVAAGIMPFIMGEWKPMVSFGLLLAFWVVTSIFVGIRHRLQNSGEGGL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
ITKLVKQPRSYYGMHCAHFGIAVFIIGVTLVNGYETEKDVRMEVGSTVTLKDYTFQFNGT
HHHHHHCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEEEEECCC
KSVPGPNYNASQGQIEVFREGKKISELFPEKRTYTASGMPMTEADVDMGFLRDLYVALGE
CCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCC
PLENDAWIVRVYHKPFVNWIWFGCILMALGGALSVSDRRYRLAINKKYRRKAAETPGAAD
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECHHHHHHHCCCCCCCC
IPAKDIMVTNSVTLSEEGGKA
CCCCCEEEECCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA