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The map label for this gene is xerC [H]

Identifier: 114331554

GI number: 114331554

Start: 1642654

End: 1643619

Strand: Direct

Name: xerC [H]

Synonym: Neut_1567

Alternate gene names: 114331554

Gene position: 1642654-1643619 (Clockwise)

Preceding gene: 114331553

Following gene: 114331564

Centisome position: 61.73

GC content: 51.55

Gene sequence:

>966_bases
GTGAATCCACTTCATGACAAGCAGGATCTTCCTGCCTTACCATCGCTGCTTGGCGAATATCTGACTTATCTGTCCAGCAC
GCGTAGCCTTTCTGTTCAAACACAGCATCATTACCGGCGCGACCTGATAGCATTGGTACGCTGTACTATCGCTCAACACG
AAAACGGAAACAACAAGATTTCTGATATTTCGCTGACCCGGTTGCACTCGCATGATATCCGCCATTTCATCGCACGCTTA
CATAGTAGCGGCCTTTCCGGCAGAAGCCTGGCACGTATGCTGTCCGCTTGGCGCGGATTTTATCGTTATCTGATCCGTCA
CCATCACCATAACGGGAACCCCTGCCTGGATGTGCGTGTGCCAAAATCTCCACATAAACTGCCGCATGCGCTTTCGCCAG
ATGAAGCCGCACAACTGCTGACATTCAACCCTTCTTCTAATGATATGCTGGCAACACGCGATCTCGCCATATTCGAGCTG
TTCTATTCATCTGGATTACGTCTGACTGAGCTAACACAACTCCAACCAACTGATATTGATTTCACTGGGGGCACAGTGCG
CGTTACGGGTAAAGGCAATAAAACCCGTATCGTGCCAGTTGGCGAGCTGGCGCTACGCGCACTACAGGCCTGGCTACCGC
TGCGCAGTGCGTGGCTGATACCGGGTGAGACGGCATTATTTTTATCACAGCGCGGGCGTCGCATCCACCCGCGCACAATT
GCTTACCGTCTGCATCAGCGTGCCCAATTGCAAAACCTTGATAGCCGGGTACATCCGCACACACTGCGCCATTCATTTGC
TTCTCATTTGTTGCAATCCAGCGGCGATCTGCGTGCAGTTCAGGAAATGCTCGGGCATAGCAGTATCCGCAGTACGCAGG
TCTACACTCACCTGGATTTTCAGCATTTAGCAAAAATCTACGACCAGGCACATCCGCGCGCCAGAAAAAAACCAAAAACA
GATTAG

Upstream 100 bases:

>100_bases
TTTTTTCCCGACATGGGCACGCTTTATCTGGAACGCCTGGGAGATATGGTCAGCAGTTCCATTACGCGACTGATACAGCA
GGCTCCTGGAGCCACCACGT

Downstream 100 bases:

>100_bases
ATCTTGCAGGATACTTGAGGATATGGGAGAACCGGATACAGAAGAATCAGGAGTTATTCCCGAGAGCTGACCAGTTTCTT
CGGGTGACACGTGCTTCTGA

Product: tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MNPLHDKQDLPALPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHDIRHFIARL
HSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALSPDEAAQLLTFNPSSNDMLATRDLAIFEL
FYSSGLRLTELTQLQPTDIDFTGGTVRVTGKGNKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTI
AYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARKKPKT
D

Sequences:

>Translated_321_residues
MNPLHDKQDLPALPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHDIRHFIARL
HSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALSPDEAAQLLTFNPSSNDMLATRDLAIFEL
FYSSGLRLTELTQLQPTDIDFTGGTVRVTGKGNKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTI
AYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARKKPKT
D
>Mature_321_residues
MNPLHDKQDLPALPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHDIRHFIARL
HSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALSPDEAAQLLTFNPSSNDMLATRDLAIFEL
FYSSGLRLTELTQLQPTDIDFTGGTVRVTGKGNKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTI
AYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARKKPKT
D

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=298, Percent_Identity=43.9597315436242, Blast_Score=230, Evalue=9e-62,
Organism=Escherichia coli, GI1789261, Length=311, Percent_Identity=37.620578778135, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1790768, Length=162, Percent_Identity=30.8641975308642, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790767, Length=167, Percent_Identity=28.7425149700599, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36562; Mature: 36562

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLHDKQDLPALPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKI
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEE
SDISLTRLHSHDIRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRV
CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PKSPHKLPHALSPDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDID
CCCCCCCCCCCCCHHHCEEEEECCCCCCEEEHHHHHHHHHHHHCCCCEEHHCCCCCCCEE
FTGGTVRVTGKGNKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTI
ECCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHCCCCCCHHHH
AYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDF
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEECCH
QHLAKIYDQAHPRARKKPKTD
HHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure
MNPLHDKQDLPALPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKI
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEE
SDISLTRLHSHDIRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRV
CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PKSPHKLPHALSPDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDID
CCCCCCCCCCCCCHHHCEEEEECCCCCCEEEHHHHHHHHHHHHCCCCEEHHCCCCCCCEE
FTGGTVRVTGKGNKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTI
ECCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHCCCCCCHHHH
AYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDF
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEECCH
QHLAKIYDQAHPRARKKPKTD
HHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA