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The map label for this gene is tdcF [C]

Identifier: 114331544

GI number: 114331544

Start: 1629625

End: 1630014

Strand: Direct

Name: tdcF [C]

Synonym: Neut_1557

Alternate gene names: 114331544

Gene position: 1629625-1630014 (Clockwise)

Preceding gene: 114331542

Following gene: 114331545

Centisome position: 61.24

GC content: 50.51

Gene sequence:

>390_bases
ATGAGCAAATTTGTTGTCCAGACCAATGATGCCCCACAAGCAATCGGCACCTATTCCCAGGCTGTCTGCATAACAGGTGG
GGAAACTGTCTATCTTTCCGGTCAGATCGGGCTTGATCCAGCCAGCATGGAAATGGTACACGGCATTGATGCACAGATTG
AACAAGTTATTACTAATCTCAAGGCGGTCATTGTTGCCAGTGGCGGCAGCCTGAGTGATGTCGTCAAACTGAATGTTTAT
CTGACTGATCTGGGCAATTTTTCCAGAGTTAATGAAGTCATGGGCAAGCATTTCAACCAACCTTATCCCGCACGCGCCGC
TATCGGCGTGGCAGCATTGCCGCGCGGGGCACTGGTGGAAATGGATGCCGTGGCGGTACTGGATAAGTAA

Upstream 100 bases:

>100_bases
CAAGTTTCTGCATGAATCTACTCTTAACAAGAATTAAAATATTGTTGCACCCACATGGGCGTAATCCTTTGCATTTTATC
GTACTAACTGAGGAGTCAGA

Downstream 100 bases:

>100_bases
AACCCTACGTACTACTCACATCATTTTCTCCATTGGCTGCCCAATCTTTCAGCTCACTGGATAAGGCATTACGCAAAAAA
CTTGAAAAACTCGGCCTATT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSKFVVQTNDAPQAIGTYSQAVCITGGETVYLSGQIGLDPASMEMVHGIDAQIEQVITNLKAVIVASGGSLSDVVKLNVY
LTDLGNFSRVNEVMGKHFNQPYPARAAIGVAALPRGALVEMDAVAVLDK

Sequences:

>Translated_129_residues
MSKFVVQTNDAPQAIGTYSQAVCITGGETVYLSGQIGLDPASMEMVHGIDAQIEQVITNLKAVIVASGGSLSDVVKLNVY
LTDLGNFSRVNEVMGKHFNQPYPARAAIGVAALPRGALVEMDAVAVLDK
>Mature_128_residues
SKFVVQTNDAPQAIGTYSQAVCITGGETVYLSGQIGLDPASMEMVHGIDAQIEQVITNLKAVIVASGGSLSDVVKLNVYL
TDLGNFSRVNEVMGKHFNQPYPARAAIGVAALPRGALVEMDAVAVLDK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=43.2, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=37.7952755905512, Blast_Score=92, Evalue=8e-21,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=37.984496124031, Blast_Score=85, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=46.8253968253968, Blast_Score=118, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=46.8253968253968, Blast_Score=118, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=46.8253968253968, Blast_Score=118, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=41.3223140495868, Blast_Score=97, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6320899, Length=96, Percent_Identity=44.7916666666667, Blast_Score=87, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=39.0243902439024, Blast_Score=90, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13550; Mature: 13419

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFVVQTNDAPQAIGTYSQAVCITGGETVYLSGQIGLDPASMEMVHGIDAQIEQVITNL
CCCEEEEECCCCCHHCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCC
KAVIVASGGSLSDVVKLNVYLTDLGNFSRVNEVMGKHFNQPYPARAAIGVAALPRGALVE
EEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCCHHCCCCCCEEE
MDAVAVLDK
ECEEEEECC
>Mature Secondary Structure 
SKFVVQTNDAPQAIGTYSQAVCITGGETVYLSGQIGLDPASMEMVHGIDAQIEQVITNL
CCEEEEECCCCCHHCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCC
KAVIVASGGSLSDVVKLNVYLTDLGNFSRVNEVMGKHFNQPYPARAAIGVAALPRGALVE
EEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCCHHCCCCCCEEE
MDAVAVLDK
ECEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]