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The map label for this gene is yebA [H]

Identifier: 114331531

GI number: 114331531

Start: 1612170

End: 1613501

Strand: Reverse

Name: yebA [H]

Synonym: Neut_1544

Alternate gene names: 114331531

Gene position: 1613501-1612170 (Counterclockwise)

Preceding gene: 114331533

Following gene: 114331530

Centisome position: 60.63

GC content: 47.45

Gene sequence:

>1332_bases
TTGATTTACTACCAGTCACCTCGTAAAAGAAAAAGCATTCTAGCGCAAAAACTCACTGTTTTCGCACAAAAAAAGGTACG
TTGGATCACCATCTTGTCCAGTTTACCGTTATTCGGGATGGTTACCGCTTTTGGAATTGTCCCCGATTCCTCCTTTCAGG
AAATACCCAATAAAAAAATAGTTCGTGCCTTGCCATTGCCGGAAGAGTTTGCATCTTCTGATCCTGAAATGACTTTCTGG
CATCAGGAAAGTATACGTCGGGGAGATACCATTTCGGCGATTCTTGCTCGTCTTGAAATCAGTCAAAAAGACAAGAATCG
CTTTCTAGATACTGTCCGGGGGAGTCGGGCGATGAGCCAGCTTAAGCCGGGGGAAATCATTCATGCGGAAACCCGGCCGA
ACGGAGAATTGTTAACACTGCGCTACTTTTACGGAAATGGTGAGCAGTTTCAGGTCGAAAAAATCGATGGGACATTTGAG
CTGAACGAGCAGTCAGCTGAAGGTGATACGCGTGTCCTGGTGGGTTCGGGAGTGATCAGTTCATCATTGTTTGCAGCCGT
TGACAAGGCTGACTTACCGAGCACAATCGCCTCCCAGATGATTGATATATTTTCCAGTAGTATTGATTTTCACCGTGATG
TCCGAAAGGGTGATCGTTTTACGGTTGTTTATGAATCCGCACAGGATGAAAGCGGGAAAACACAAGTCGGGCGTGTGCTT
GCGGTAGAGTTTTTCAACAAGGAGAAATCCAGGCGCGCTGTCTATTTTCGGCCACCGGGTGAGGAGGGCGGTTATTATAC
GCCAGAGGGAGAAAGTCTGAGCAAACCATTTCTGATGGCACCTTTAAAGTTTTCCCGGATCAGTTCTGGGTTTACTCATG
CGCGCTACCATCCCATCTTGAAACGCTGGCGAGCCCACAGAGGGATTGACTATGCTGCTCCGACCGGAACACCCGTGATG
GCGACAGCAAATGGTACTGTTGAGTTTAAAGGCAAGCAGAGTGGCTATGGTAATCTGATTATACTCAAGCATGATGCTCA
ATACAGCTCTGCATATGGCCATTTATCGGGCTTTAATAGAAAATTGCAGAAAGGAATGCGCGTCAAACAAGGCGATATTA
TTGGCTTTGTTGGATCGACCGGGATGGCGACCGGCCCCCACCTTCATTATGAGTTGCGGGTAAACGGGGTTCAGCGCGAC
CCTTCTAAAATCGTAATGCCAGCAGCACAGCCCGTCAGTAAAAAATATTATTCGGCTTTTCACAGACAAACCAGGGAACT
AACTTCCCGGCTTGATTTGCTGCGCAATACCAGCTTTGCTGCATTGAACTGA

Upstream 100 bases:

>100_bases
TCAGACACGGCCAGCCAGTAAAAAATCAGTCGTCATTATATTTATGCTTTTCCGTGTTAGACTTGAAAAATTTCCAACAG
ACGAATAGGAGTGATGGCAT

Downstream 100 bases:

>100_bases
TTCAGCCTGGATAGTCGTCTATAAAGTCAGGTGAAATGTATTACATCGGCATTATGTCAGGTACCAGTTTGGATGGTGTC
GATGCAGTACTGGTAAATTT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MIYYQSPRKRKSILAQKLTVFAQKKVRWITILSSLPLFGMVTAFGIVPDSSFQEIPNKKIVRALPLPEEFASSDPEMTFW
HQESIRRGDTISAILARLEISQKDKNRFLDTVRGSRAMSQLKPGEIIHAETRPNGELLTLRYFYGNGEQFQVEKIDGTFE
LNEQSAEGDTRVLVGSGVISSSLFAAVDKADLPSTIASQMIDIFSSSIDFHRDVRKGDRFTVVYESAQDESGKTQVGRVL
AVEFFNKEKSRRAVYFRPPGEEGGYYTPEGESLSKPFLMAPLKFSRISSGFTHARYHPILKRWRAHRGIDYAAPTGTPVM
ATANGTVEFKGKQSGYGNLIILKHDAQYSSAYGHLSGFNRKLQKGMRVKQGDIIGFVGSTGMATGPHLHYELRVNGVQRD
PSKIVMPAAQPVSKKYYSAFHRQTRELTSRLDLLRNTSFAALN

Sequences:

>Translated_443_residues
MIYYQSPRKRKSILAQKLTVFAQKKVRWITILSSLPLFGMVTAFGIVPDSSFQEIPNKKIVRALPLPEEFASSDPEMTFW
HQESIRRGDTISAILARLEISQKDKNRFLDTVRGSRAMSQLKPGEIIHAETRPNGELLTLRYFYGNGEQFQVEKIDGTFE
LNEQSAEGDTRVLVGSGVISSSLFAAVDKADLPSTIASQMIDIFSSSIDFHRDVRKGDRFTVVYESAQDESGKTQVGRVL
AVEFFNKEKSRRAVYFRPPGEEGGYYTPEGESLSKPFLMAPLKFSRISSGFTHARYHPILKRWRAHRGIDYAAPTGTPVM
ATANGTVEFKGKQSGYGNLIILKHDAQYSSAYGHLSGFNRKLQKGMRVKQGDIIGFVGSTGMATGPHLHYELRVNGVQRD
PSKIVMPAAQPVSKKYYSAFHRQTRELTSRLDLLRNTSFAALN
>Mature_443_residues
MIYYQSPRKRKSILAQKLTVFAQKKVRWITILSSLPLFGMVTAFGIVPDSSFQEIPNKKIVRALPLPEEFASSDPEMTFW
HQESIRRGDTISAILARLEISQKDKNRFLDTVRGSRAMSQLKPGEIIHAETRPNGELLTLRYFYGNGEQFQVEKIDGTFE
LNEQSAEGDTRVLVGSGVISSSLFAAVDKADLPSTIASQMIDIFSSSIDFHRDVRKGDRFTVVYESAQDESGKTQVGRVL
AVEFFNKEKSRRAVYFRPPGEEGGYYTPEGESLSKPFLMAPLKFSRISSGFTHARYHPILKRWRAHRGIDYAAPTGTPVM
ATANGTVEFKGKQSGYGNLIILKHDAQYSSAYGHLSGFNRKLQKGMRVKQGDIIGFVGSTGMATGPHLHYELRVNGVQRD
PSKIVMPAAQPVSKKYYSAFHRQTRELTSRLDLLRNTSFAALN

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=355, Percent_Identity=29.2957746478873, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87082174, Length=104, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789099, Length=98, Percent_Identity=40.8163265306122, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49662; Mature: 49662

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYYQSPRKRKSILAQKLTVFAQKKVRWITILSSLPLFGMVTAFGIVPDSSFQEIPNKKI
CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHCCHHHHHHHHHCCCCCHHHHCCCCCE
VRALPLPEEFASSDPEMTFWHQESIRRGDTISAILARLEISQKDKNRFLDTVRGSRAMSQ
EEECCCCHHHCCCCCCEEEEEHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LKPGEIIHAETRPNGELLTLRYFYGNGEQFQVEKIDGTFELNEQSAEGDTRVLVGSGVIS
CCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEECCCEEEECCCCCCCCCEEEEECCHHH
SSLFAAVDKADLPSTIASQMIDIFSSSIDFHRDVRKGDRFTVVYESAQDESGKTQVGRVL
HHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHEE
AVEFFNKEKSRRAVYFRPPGEEGGYYTPEGESLSKPFLMAPLKFSRISSGFTHARYHPIL
EEEECCCCCCCCEEEECCCCCCCCEECCCCCCCCCCEEECCCCHHHHCCCCCHHHHHHHH
KRWRAHRGIDYAAPTGTPVMATANGTVEFKGKQSGYGNLIILKHDAQYSSAYGHLSGFNR
HHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
KLQKGMRVKQGDIIGFVGSTGMATGPHLHYELRVNGVQRDPSKIVMPAAQPVSKKYYSAF
HHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHH
HRQTRELTSRLDLLRNTSFAALN
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIYYQSPRKRKSILAQKLTVFAQKKVRWITILSSLPLFGMVTAFGIVPDSSFQEIPNKKI
CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHCCHHHHHHHHHCCCCCHHHHCCCCCE
VRALPLPEEFASSDPEMTFWHQESIRRGDTISAILARLEISQKDKNRFLDTVRGSRAMSQ
EEECCCCHHHCCCCCCEEEEEHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LKPGEIIHAETRPNGELLTLRYFYGNGEQFQVEKIDGTFELNEQSAEGDTRVLVGSGVIS
CCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEECCCEEEECCCCCCCCCEEEEECCHHH
SSLFAAVDKADLPSTIASQMIDIFSSSIDFHRDVRKGDRFTVVYESAQDESGKTQVGRVL
HHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHEE
AVEFFNKEKSRRAVYFRPPGEEGGYYTPEGESLSKPFLMAPLKFSRISSGFTHARYHPIL
EEEECCCCCCCCEEEECCCCCCCCEECCCCCCCCCCEEECCCCHHHHCCCCCHHHHHHHH
KRWRAHRGIDYAAPTGTPVMATANGTVEFKGKQSGYGNLIILKHDAQYSSAYGHLSGFNR
HHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
KLQKGMRVKQGDIIGFVGSTGMATGPHLHYELRVNGVQRDPSKIVMPAAQPVSKKYYSAF
HHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHH
HRQTRELTSRLDLLRNTSFAALN
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]