Click here to switch to the map view.

The map label for this gene is rubB [H]

Identifier: 114331521

GI number: 114331521

Start: 1603708

End: 1604862

Strand: Reverse

Name: rubB [H]

Synonym: Neut_1534

Alternate gene names: 114331521

Gene position: 1604862-1603708 (Counterclockwise)

Preceding gene: 114331523

Following gene: 114331520

Centisome position: 60.31

GC content: 47.97

Gene sequence:

>1155_bases
ATGAGTCAATTGCCTGTCGTAGTTATAGGAAGCGGGTTGGCGGGTTATACGGTTGTACGCGAGCTGCGGAGACTGGATTC
TGCCGTGCCAATCACTCTCTTATCTGCCGATCATGGCGGTTTTTATTCAAAGCCTATGTTATCCAATGCTTTGGCAACAG
GTAAAACACCTGATTCCATTCTGAGTGCGAGCTCAGAACAGATGTCCGGACAACTGGGTATCACAGTGCAGCCTTATACG
CGCGTCGATACACTTGATGTGGCTGCGAATAATGTTTATTTCGAAAATGGTACGCAGCTGACTTATGGTCGGCTCGTATT
GGCGCTGGGAGCTGATCCGATGCGCCTGCCGATACCTGGAAGCGGTGCGGATGATATGCTATCCATTAATGATCTGGATG
ATTACCGGAGATTTCGTGAGAACCTGGAAAATAAGCGTCATGTCGCTATACTGGGCGCCGGCTTGATTGGTTGCGAGTTT
GCCAACGATCTTGTAGTAAAAGGCTATCAGGTAAGCGTCTTTGACTTGAGTCCGCAACCATTAGGTCGGTTGCTTCCTTC
CGAAGCCGGACACTTTTTCCGTGAGAAATTGTCAACGGCAGGTGTTAAATTTCTGCTCGGTACAACTGTTGAGAAGATAA
GCAAGGAGAATGGATATTATCATTTATATTACAAAGGAGGTGGAGTTGTTCAGGCCGATATGGTGCTGTCTGCCATTGGT
TTGAAGCCACGTACTGGTTTAGCTGAGGCAGCAGGAATTCAGATCAATCGTGGAATTACGGTTGATCGTTATTTACAGTC
CAGTATTCAGAATATCTATGCCTTGGGTGATTGTGCAGAAGTGGCCGGGAAAGTATTACCTTTTATTCTGCCAATTTCGC
ATGCTGGTCGAGCTCTGGCTGCAACAATTGCCGGTAACCAGACATTACTGCGCTACCCGGCGATGCCGGTAATGGTCAAA
ACACCTGCCTGCCCGGCGGTTATCTCGCCTCCCGATCCTGGGGTAGAAGGTGAGTGGAAAATTCAAACTGTTGAGAATGG
CATGAAAGCTTTGTATCAGGATGAAGCTGGTAATTTACATGGTTTTGCCTTGCTGGGAACGGCAACAAATGAACGTAATG
CTTTGGTTGCCCTTCTGCCGCCCGTATTGGCTTAG

Upstream 100 bases:

>100_bases
AATCCTGAAGGGTGGGAATGCTTGTGTGAATTCGGTTGTTCGCTGGTTTGGGCGAAAAGAAAGGAGATAAATTGATTGTG
ATCAAACAGGGTATATCAAT

Downstream 100 bases:

>100_bases
GAAATTATTGGTACTAATCTGTGGTAATAAAGCTTGTGTATCCAAATGATATTCAGGCCTGCCACAAAGAACCAGAACCG
TATGAGATTTGTACTGACTA

Product: FAD-dependent pyridine nucleotide-disulphide oxidoreductase

Products: NA

Alternate protein names: RdxR [H]

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MSQLPVVVIGSGLAGYTVVRELRRLDSAVPITLLSADHGGFYSKPMLSNALATGKTPDSILSASSEQMSGQLGITVQPYT
RVDTLDVAANNVYFENGTQLTYGRLVLALGADPMRLPIPGSGADDMLSINDLDDYRRFRENLENKRHVAILGAGLIGCEF
ANDLVVKGYQVSVFDLSPQPLGRLLPSEAGHFFREKLSTAGVKFLLGTTVEKISKENGYYHLYYKGGGVVQADMVLSAIG
LKPRTGLAEAAGIQINRGITVDRYLQSSIQNIYALGDCAEVAGKVLPFILPISHAGRALAATIAGNQTLLRYPAMPVMVK
TPACPAVISPPDPGVEGEWKIQTVENGMKALYQDEAGNLHGFALLGTATNERNALVALLPPVLA

Sequences:

>Translated_384_residues
MSQLPVVVIGSGLAGYTVVRELRRLDSAVPITLLSADHGGFYSKPMLSNALATGKTPDSILSASSEQMSGQLGITVQPYT
RVDTLDVAANNVYFENGTQLTYGRLVLALGADPMRLPIPGSGADDMLSINDLDDYRRFRENLENKRHVAILGAGLIGCEF
ANDLVVKGYQVSVFDLSPQPLGRLLPSEAGHFFREKLSTAGVKFLLGTTVEKISKENGYYHLYYKGGGVVQADMVLSAIG
LKPRTGLAEAAGIQINRGITVDRYLQSSIQNIYALGDCAEVAGKVLPFILPISHAGRALAATIAGNQTLLRYPAMPVMVK
TPACPAVISPPDPGVEGEWKIQTVENGMKALYQDEAGNLHGFALLGTATNERNALVALLPPVLA
>Mature_383_residues
SQLPVVVIGSGLAGYTVVRELRRLDSAVPITLLSADHGGFYSKPMLSNALATGKTPDSILSASSEQMSGQLGITVQPYTR
VDTLDVAANNVYFENGTQLTYGRLVLALGADPMRLPIPGSGADDMLSINDLDDYRRFRENLENKRHVAILGAGLIGCEFA
NDLVVKGYQVSVFDLSPQPLGRLLPSEAGHFFREKLSTAGVKFLLGTTVEKISKENGYYHLYYKGGGVVQADMVLSAIGL
KPRTGLAEAAGIQINRGITVDRYLQSSIQNIYALGDCAEVAGKVLPFILPISHAGRALAATIAGNQTLLRYPAMPVMVKT
PACPAVISPPDPGVEGEWKIQTVENGMKALYQDEAGNLHGFALLGTATNERNALVALLPPVLA

Specific function: Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI226437568, Length=279, Percent_Identity=30.8243727598566, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI65787454, Length=279, Percent_Identity=30.8243727598566, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI21389617, Length=279, Percent_Identity=30.8243727598566, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI4757732, Length=312, Percent_Identity=26.2820512820513, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI22202629, Length=312, Percent_Identity=26.2820512820513, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1789065, Length=375, Percent_Identity=36, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788892, Length=281, Percent_Identity=25.6227758007117, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789765, Length=297, Percent_Identity=24.5791245791246, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787352, Length=332, Percent_Identity=25.9036144578313, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559934, Length=277, Percent_Identity=27.7978339350181, Blast_Score=101, Evalue=8e-22,
Organism=Drosophila melanogaster, GI28573993, Length=315, Percent_Identity=23.1746031746032, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24581020, Length=315, Percent_Identity=23.1746031746032, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24585130, Length=302, Percent_Identity=22.8476821192053, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639257, Length=282, Percent_Identity=22.3404255319149, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281359715, Length=281, Percent_Identity=22.4199288256228, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281359713, Length=281, Percent_Identity=22.4199288256228, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639250, Length=281, Percent_Identity=22.4199288256228, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18543267, Length=281, Percent_Identity=22.4199288256228, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639252, Length=281, Percent_Identity=22.4199288256228, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.18.1.1 [H]

Molecular weight: Translated: 40953; Mature: 40821

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLPVVVIGSGLAGYTVVRELRRLDSAVPITLLSADHGGFYSKPMLSNALATGKTPDSI
CCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCHHH
LSASSEQMSGQLGITVQPYTRVDTLDVAANNVYFENGTQLTYGRLVLALGADPMRLPIPG
HCCCCHHHCCEEEEEECCCCCEEEEEEEECEEEEECCCEEEHHEEEEEECCCCEEECCCC
SGADDMLSINDLDDYRRFRENLENKRHVAILGAGLIGCEFANDLVVKGYQVSVFDLSPQP
CCCCCEEEECCHHHHHHHHHHHCCCCEEEEEECCEEEHHCCCCEEECCEEEEEEECCCCH
LGRLLPSEAGHFFREKLSTAGVKFLLGTTVEKISKENGYYHLYYKGGGVVQADMVLSAIG
HHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHC
LKPRTGLAEAAGIQINRGITVDRYLQSSIQNIYALGDCAEVAGKVLPFILPISHAGRALA
CCCCCCCCHHCCEEEECCCCHHHHHHHHHHHHEECCCHHHHHHHHHHEEEECCCCCCEEE
ATIAGNQTLLRYPAMPVMVKTPACPAVISPPDPGVEGEWKIQTVENGMKALYQDEAGNLH
EEECCCCEEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEE
GFALLGTATNERNALVALLPPVLA
EEEEEEECCCCCCEEEEECCCCCC
>Mature Secondary Structure 
SQLPVVVIGSGLAGYTVVRELRRLDSAVPITLLSADHGGFYSKPMLSNALATGKTPDSI
CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCHHH
LSASSEQMSGQLGITVQPYTRVDTLDVAANNVYFENGTQLTYGRLVLALGADPMRLPIPG
HCCCCHHHCCEEEEEECCCCCEEEEEEEECEEEEECCCEEEHHEEEEEECCCCEEECCCC
SGADDMLSINDLDDYRRFRENLENKRHVAILGAGLIGCEFANDLVVKGYQVSVFDLSPQP
CCCCCEEEECCHHHHHHHHHHHCCCCEEEEEECCEEEHHCCCCEEECCEEEEEEECCCCH
LGRLLPSEAGHFFREKLSTAGVKFLLGTTVEKISKENGYYHLYYKGGGVVQADMVLSAIG
HHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHC
LKPRTGLAEAAGIQINRGITVDRYLQSSIQNIYALGDCAEVAGKVLPFILPISHAGRALA
CCCCCCCCHHCCEEEECCCCHHHHHHHHHHHHEECCCHHHHHHHHHHEEEECCCCCCEEE
ATIAGNQTLLRYPAMPVMVKTPACPAVISPPDPGVEGEWKIQTVENGMKALYQDEAGNLH
EEECCCCEEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEE
GFALLGTATNERNALVALLPPVLA
EEEEEEECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7670642 [H]