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The map label for this gene is nifU [H]

Identifier: 114331233

GI number: 114331233

Start: 1293489

End: 1293971

Strand: Reverse

Name: nifU [H]

Synonym: Neut_1237

Alternate gene names: 114331233

Gene position: 1293971-1293489 (Counterclockwise)

Preceding gene: 114331234

Following gene: 114331232

Centisome position: 48.63

GC content: 44.72

Gene sequence:

>483_bases
ATGAGTTTGAAATCAATTTATCAAGAAGTTATTCTTGATCATAATCGCAAGCCGCGTAACTATGGTTCTCTTAGCCATCC
TACCCACCATGCGACAGGACATAATCCGCTGTGCGGCGATCGGATTGACCTGGATGTCAATATGCTGAATGAACGTATTG
AAGAAATTGTATTTCGAGGTGAATCCTGTGCAATTTGTAAGGCTTCCTCTTCAATGATGACCAATGCCGTTAAGGGAAGA
TCTCGTCAGGAAGCAGAAGCTTTGATTCAGGAATTTCGGGATATGCTGGTAAGTAGAGAAAACAAGGATTTTGATCACCT
TGGTCGGCTCAAGGTGCTTGCAGGGGTACGTGATTTACCGACCAGAGTCAAGTGTGCGATTCTGCCGTGGCATACCCTGC
ATGCGGCCATGAATTCAACAGGAGATGCCACAACTGAAGCAGATAGTCACCTAAACAACAAGCCCGTAGCAAATAATTAC
TGA

Upstream 100 bases:

>100_bases
TGGCGGCAACGTCGCGTGCCTCATTTTCTTTTTATAATACTAAAAAAGAGATCGATGCTCTGGTGGCAGGTATTCGGTCT
GTACAAAAGGTTTTCGCACA

Downstream 100 bases:

>100_bases
TATATAGCCATGCCGAAGATTGCAGAAATTGAGGGAACTCCAAACCCTAATGCATTGAAGTTTATCCTGAAGGAGCCACT
GACTTGGGGGGTTACCAAAT

Product: SUF system FeS assembly protein, NifU family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSLKSIYQEVILDHNRKPRNYGSLSHPTHHATGHNPLCGDRIDLDVNMLNERIEEIVFRGESCAICKASSSMMTNAVKGR
SRQEAEALIQEFRDMLVSRENKDFDHLGRLKVLAGVRDLPTRVKCAILPWHTLHAAMNSTGDATTEADSHLNNKPVANNY

Sequences:

>Translated_160_residues
MSLKSIYQEVILDHNRKPRNYGSLSHPTHHATGHNPLCGDRIDLDVNMLNERIEEIVFRGESCAICKASSSMMTNAVKGR
SRQEAEALIQEFRDMLVSRENKDFDHLGRLKVLAGVRDLPTRVKCAILPWHTLHAAMNSTGDATTEADSHLNNKPVANNY
>Mature_159_residues
SLKSIYQEVILDHNRKPRNYGSLSHPTHHATGHNPLCGDRIDLDVNMLNERIEEIVFRGESCAICKASSSMMTNAVKGRS
RQEAEALIQEFRDMLVSRENKDFDHLGRLKVLAGVRDLPTRVKCAILPWHTLHAAMNSTGDATTEADSHLNNKPVANNY

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 17977; Mature: 17845

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKSIYQEVILDHNRKPRNYGSLSHPTHHATGHNPLCGDRIDLDVNMLNERIEEIVFRG
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
ESCAICKASSSMMTNAVKGRSRQEAEALIQEFRDMLVSRENKDFDHLGRLKVLAGVRDLP
CCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
TRVKCAILPWHTLHAAMNSTGDATTEADSHLNNKPVANNY
CCEEEEECCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLKSIYQEVILDHNRKPRNYGSLSHPTHHATGHNPLCGDRIDLDVNMLNERIEEIVFRG
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
ESCAICKASSSMMTNAVKGRSRQEAEALIQEFRDMLVSRENKDFDHLGRLKVLAGVRDLP
CCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
TRVKCAILPWHTLHAAMNSTGDATTEADSHLNNKPVANNY
CCEEEEECCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]