Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113477421
Identifier: 113477421
GI number: 113477421
Start: 6161572
End: 6161988
Strand: Reverse
Name: 113477421
Synonym: Tery_3984
Alternate gene names: NA
Gene position: 6161988-6161572 (Counterclockwise)
Preceding gene: 113477426
Following gene: 113477420
Centisome position: 79.51
GC content: 32.37
Gene sequence:
>417_bases TTGAGGAAATTTATCATGTTATCTAGACAGACCTTTGACGATCATTCCCTAAGTGAATCTTTTTACCAAGCACTAATTAA TTGCTTTTATGAAACTTTAAACTTTTCGACTCAATCTTTATTAGATAATTGTACTTTTGGCTTTGCCCCAGATTCACTAG GGGTCCAAACTTTTTTCATTATTACTTCTTCTACATTGGAAGCAGATAAATTAGGTCAAGATCTTGAGAGCCTCAAAAAT AGAGTAATTTTATTAATGCCAGCAGTAGGCAAACTTGCGATCTGCGTGAATCCACTGCTGGAAAAAAAGGAATCAGAATC ATCTAAAGAGTGTGTTGATAAAGACCAAAAATTTCTGCCCCACTATATGATTTGTAAAATTTTTCCTATAGATTTATCAA ATAAAAATCAAGACTAA
Upstream 100 bases:
>100_bases GCACAATAATTAATGCATCAAGTTTTGAGGAATAATGACTGTCCCCAGATGAAGGTATCCAACGGCTTTTTGTTTCACTA TCAAGAAAAAAAAATGCGAC
Downstream 100 bases:
>100_bases TTTTTCGATTGAGGGCGTGTATGCAAACTTTTATAATTAATTAATTGTGAAAGAATAAATCGGAAGATCAGACTTCAGTT GTTACTAAAAGCATATTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 138; Mature: 138
Protein sequence:
>138_residues MRKFIMLSRQTFDDHSLSESFYQALINCFYETLNFSTQSLLDNCTFGFAPDSLGVQTFFIITSSTLEADKLGQDLESLKN RVILLMPAVGKLAICVNPLLEKKESESSKECVDKDQKFLPHYMICKIFPIDLSNKNQD
Sequences:
>Translated_138_residues MRKFIMLSRQTFDDHSLSESFYQALINCFYETLNFSTQSLLDNCTFGFAPDSLGVQTFFIITSSTLEADKLGQDLESLKN RVILLMPAVGKLAICVNPLLEKKESESSKECVDKDQKFLPHYMICKIFPIDLSNKNQD >Mature_138_residues MRKFIMLSRQTFDDHSLSESFYQALINCFYETLNFSTQSLLDNCTFGFAPDSLGVQTFFIITSSTLEADKLGQDLESLKN RVILLMPAVGKLAICVNPLLEKKESESSKECVDKDQKFLPHYMICKIFPIDLSNKNQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15746; Mature: 15746
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKFIMLSRQTFDDHSLSESFYQALINCFYETLNFSTQSLLDNCTFGFAPDSLGVQTFFI CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEEEE ITSSTLEADKLGQDLESLKNRVILLMPAVGKLAICVNPLLEKKESESSKECVDKDQKFLP EECCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC HYMICKIFPIDLSNKNQD HHHHHEEEECCCCCCCCC >Mature Secondary Structure MRKFIMLSRQTFDDHSLSESFYQALINCFYETLNFSTQSLLDNCTFGFAPDSLGVQTFFI CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEEEE ITSSTLEADKLGQDLESLKNRVILLMPAVGKLAICVNPLLEKKESESSKECVDKDQKFLP EECCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC HYMICKIFPIDLSNKNQD HHHHHEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA