| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477368
Identifier: 113477368
GI number: 113477368
Start: 6064632
End: 6065948
Strand: Reverse
Name: 113477368
Synonym: Tery_3924
Alternate gene names: NA
Gene position: 6065948-6064632 (Counterclockwise)
Preceding gene: 113477369
Following gene: 113477367
Centisome position: 78.27
GC content: 40.24
Gene sequence:
>1317_bases ATGAGCGTAAATGTCAAAGCTTTCTTTCAGGCAACAAACCCTGGTAAAGCCCTATTCAAAGATAACCAGGAAATAGAGGA AAAATACTATATTGACTTCTCCTCAGTACGGGGGGGAAAAATAATAGAAGACCTCAAAGACAATATTGCTATGTGGTTTC CCGACGAACCTACCTGTCAACTATTCACCGGACATATTGGTTGTGGTAAATCTACCGAACTCTGGCTACTCAAACAACTA TTAGAAGCAGAAGGCTTTCACGTCGTCTATTTTGAGTCAGACAAAGACCTAGAAATGGGAGATATAGACGTCAGTGATAT TCTTCTAACTATAGCTCGACAAGTCATCGAAAGTTTGAAGACCCGGGAGAAGCTCAATTTAGGTGAACCCACAAGATTCA AACGTCAAATTGAGGGAGCTATGAGACTATTGCAGACAGAAATAGAAATATCTCCTGGAGTTGAGCTTTCTTTTGGAATT GCCAAAATAACTGCTCAGGCCAAAGCTAGTCCCCAACTCCGCAGCAAACTCAGAGACTATCTCGGGCCTCGTAGCAATGG AATTATTGAAACAATAAACCAAGAGTTACTCGAACCAGCTCACGAAAAGCTGAAGCAGCGCGACAAAAAGGGATTAGTAG TTATAGTTGACAACCTTGATAAAGTTGATAGTGCCCCAAAACCTTGGGGGCGATCTCAACCAGAATATCTATTTGTTGAT CGCGGCGAACAACTAGCAAGTCTCCATTGTCATGTAATTTATACTCTACCTCTAGCACTGCGATTTTCCAATGACTATAA TAGATTAACTCAACGCTTCAAAACCGACCCCCAAGTCTTGCCAATGGTTTCTATGCAGTTGCGGGATGGTAAGGAATTTG GAGAAGGAATGGCAAAACTCAGGCAGTTAGTTTTAGCAAGAGCATTTCCCCATTTGGGAGAACAACAACGTCTAGAGAAA ATAACTGAAATTTTTGACAGTACCGAAACTTTAGATCATCTATGTAAAATGAGTGGGGGTCATGTGAGAAATATATTGCG GATACTCAATGAGGCTATTAAAAAGCAAAAAGGGTTGCCGATATCCAGTGAAAACCTGAACAAGGTAATTCAAAATTTTC GCAATGAACGTACTCTGGCAGTAGATGATCAAGAGTGGGAGTTGTTGCGCCAAGTAGCACAAACTAAAAAAGTTACAGGT GATGATGGATATCAAAAGTTGATTCGGAGTATGTTTGTCTATGAATACCGAGATGATGAAGGATCTTGGTTTGATATTAA TCCTATATTGAAAGATGCAGTGGAATTGAAAAAATGA
Upstream 100 bases:
>100_bases AGAGTCAAAAATTTGGCCTTTTATTATTTAATATTGTCTTAACTAAATCTGGAGATGTATATTATAAAATCAATGAAGTA CATATAAATCAATAAATATT
Downstream 100 bases:
>100_bases TTGATCCTGATCAAAATGAAGTCGAATTATTATCTGAGCTAATATTTGCTCTGGAAATGTCTCAAGGAGACTTTCGACTA TTTTTAGCCAGTTGTAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MSVNVKAFFQATNPGKALFKDNQEIEEKYYIDFSSVRGGKIIEDLKDNIAMWFPDEPTCQLFTGHIGCGKSTELWLLKQL LEAEGFHVVYFESDKDLEMGDIDVSDILLTIARQVIESLKTREKLNLGEPTRFKRQIEGAMRLLQTEIEISPGVELSFGI AKITAQAKASPQLRSKLRDYLGPRSNGIIETINQELLEPAHEKLKQRDKKGLVVIVDNLDKVDSAPKPWGRSQPEYLFVD RGEQLASLHCHVIYTLPLALRFSNDYNRLTQRFKTDPQVLPMVSMQLRDGKEFGEGMAKLRQLVLARAFPHLGEQQRLEK ITEIFDSTETLDHLCKMSGGHVRNILRILNEAIKKQKGLPISSENLNKVIQNFRNERTLAVDDQEWELLRQVAQTKKVTG DDGYQKLIRSMFVYEYRDDEGSWFDINPILKDAVELKK
Sequences:
>Translated_438_residues MSVNVKAFFQATNPGKALFKDNQEIEEKYYIDFSSVRGGKIIEDLKDNIAMWFPDEPTCQLFTGHIGCGKSTELWLLKQL LEAEGFHVVYFESDKDLEMGDIDVSDILLTIARQVIESLKTREKLNLGEPTRFKRQIEGAMRLLQTEIEISPGVELSFGI AKITAQAKASPQLRSKLRDYLGPRSNGIIETINQELLEPAHEKLKQRDKKGLVVIVDNLDKVDSAPKPWGRSQPEYLFVD RGEQLASLHCHVIYTLPLALRFSNDYNRLTQRFKTDPQVLPMVSMQLRDGKEFGEGMAKLRQLVLARAFPHLGEQQRLEK ITEIFDSTETLDHLCKMSGGHVRNILRILNEAIKKQKGLPISSENLNKVIQNFRNERTLAVDDQEWELLRQVAQTKKVTG DDGYQKLIRSMFVYEYRDDEGSWFDINPILKDAVELKK >Mature_437_residues SVNVKAFFQATNPGKALFKDNQEIEEKYYIDFSSVRGGKIIEDLKDNIAMWFPDEPTCQLFTGHIGCGKSTELWLLKQLL EAEGFHVVYFESDKDLEMGDIDVSDILLTIARQVIESLKTREKLNLGEPTRFKRQIEGAMRLLQTEIEISPGVELSFGIA KITAQAKASPQLRSKLRDYLGPRSNGIIETINQELLEPAHEKLKQRDKKGLVVIVDNLDKVDSAPKPWGRSQPEYLFVDR GEQLASLHCHVIYTLPLALRFSNDYNRLTQRFKTDPQVLPMVSMQLRDGKEFGEGMAKLRQLVLARAFPHLGEQQRLEKI TEIFDSTETLDHLCKMSGGHVRNILRILNEAIKKQKGLPISSENLNKVIQNFRNERTLAVDDQEWELLRQVAQTKKVTGD DGYQKLIRSMFVYEYRDDEGSWFDINPILKDAVELKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50225; Mature: 50094
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVNVKAFFQATNPGKALFKDNQEIEEKYYIDFSSVRGGKIIEDLKDNIAMWFPDEPTCQ CCCCEEEEEEECCCCHHHHCCCHHHHHHHEEEHHCCCCCHHHHHHHCCCEEECCCCCCCE LFTGHIGCGKSTELWLLKQLLEAEGFHVVYFESDKDLEMGDIDVSDILLTIARQVIESLK EEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH TREKLNLGEPTRFKRQIEGAMRLLQTEIEISPGVELSFGIAKITAQAKASPQLRSKLRDY HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCHHHHHHHHHH LGPRSNGIIETINQELLEPAHEKLKQRDKKGLVVIVDNLDKVDSAPKPWGRSQPEYLFVD CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCCCCCCCEEEEE RGEQLASLHCHVIYTLPLALRFSNDYNRLTQRFKTDPQVLPMVSMQLRDGKEFGEGMAKL CCCHHHHHHHEEEEEEHHHEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHH RQLVLARAFPHLGEQQRLEKITEIFDSTETLDHLCKMSGGHVRNILRILNEAIKKQKGLP HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC ISSENLNKVIQNFRNERTLAVDDQEWELLRQVAQTKKVTGDDGYQKLIRSMFVYEYRDDE CCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEECCC GSWFDINPILKDAVELKK CCEEECCHHHHHHHHHCC >Mature Secondary Structure SVNVKAFFQATNPGKALFKDNQEIEEKYYIDFSSVRGGKIIEDLKDNIAMWFPDEPTCQ CCCEEEEEEECCCCHHHHCCCHHHHHHHEEEHHCCCCCHHHHHHHCCCEEECCCCCCCE LFTGHIGCGKSTELWLLKQLLEAEGFHVVYFESDKDLEMGDIDVSDILLTIARQVIESLK EEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH TREKLNLGEPTRFKRQIEGAMRLLQTEIEISPGVELSFGIAKITAQAKASPQLRSKLRDY HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCHHHHHHHHHH LGPRSNGIIETINQELLEPAHEKLKQRDKKGLVVIVDNLDKVDSAPKPWGRSQPEYLFVD CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCCCCCCCEEEEE RGEQLASLHCHVIYTLPLALRFSNDYNRLTQRFKTDPQVLPMVSMQLRDGKEFGEGMAKL CCCHHHHHHHEEEEEEHHHEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHH RQLVLARAFPHLGEQQRLEKITEIFDSTETLDHLCKMSGGHVRNILRILNEAIKKQKGLP HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC ISSENLNKVIQNFRNERTLAVDDQEWELLRQVAQTKKVTGDDGYQKLIRSMFVYEYRDDE CCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEECCC GSWFDINPILKDAVELKK CCEEECCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA