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The map label for this gene is 113477252

Identifier: 113477252

GI number: 113477252

Start: 5830592

End: 5831986

Strand: Reverse

Name: 113477252

Synonym: Tery_3794

Alternate gene names: NA

Gene position: 5831986-5830592 (Counterclockwise)

Preceding gene: 113477253

Following gene: 113477244

Centisome position: 75.25

GC content: 39.64

Gene sequence:

>1395_bases
ATGACTACAACAACAAAATTTAACCCCTACTTAATGAGTAATTTTGCCCCAGTCAGCAAAGAAATAACCACTAACAACCT
AGAAATTAAAGGTGAACTCCCTAGAGACTTATCAGGAATGTATCTTAGAAATGGCCCAAATCCTCAATTTACCCCTTTAG
GTAAATATGATTGGATGGATGGCGATGGAATGATACATGGAGTAAGAATTAGTGGTGGTAGAGCAGAATATCGAAACCGC
TATGTAAGGACGGGAGGATTTGAAGTAGAAAAAGACTTAGGTTATGCCGTCTGGAGCGGCAGATTAGAACCTCCCCAAAT
GAATAATCCCTATGGCCCATATAAAAACGTGGCCAATAATGGTCTAACTTTTCACAACGGAAAACTATTAGCCCTTTGGG
AAGCAGGTTTACCTTATGAAATTAGAGTTCCCAGCCTAGAAACAACAGGACCATATTTGTGTGATGGTTACTTAGACTCT
GCTTTTACTGCTCATCCAAAAATTGACCCCATGACCGGAGAATTAATATTTTTTGGTTACGCCCTTGATGTAGCTCCATA
TTTAAAATATGGTATAATCTCAGCTAGAGGCGAGCTATTACAGATAACACCAATTAATATACCCGTTCCAAGTGGTCCCC
ATGATTTTGCCATCACAAAAAATTATACAATTTTAATGGACTTACCATTACGCTTCCGTCCAGAAAGAGAAAAACAAGGT
TTACCCGCTTGGATGTTTGAAACTGGAGTCCCCAGTCGTTTTGGTATTTTACCTCGCTGTGGAAACAATGAAGACATTCA
CTGGTTTGAAGCTCAACCTTGCTATATGAATCATATTCTCAATGCTTACGAATTTGAAGATGAAATAATATTATACGGTT
GTCGCATGAGTTCAACTTATTGGTATCCTGGTACTGCTAGAGACCCCAATGAGAATATTCCCCGCATGTATGGATGGGCA
TTTAATCTCAAAACCGGTGCTGTTAGAGAAGGGATGTTAGACAAGAGACCCTCCGAATTTCCTTGTATTAATCATAGGTT
TGTCGGTCGGCAAATGCGCTATGGTTATACTTCTAGAATGGCATCCTTGCGACCATTGTTTGATGGAATTATTAAATATG
ACTTCAGTACTGGTAGATCCCTATCCCATGACTTTGGTGAAGGTCGTTATGGGGGCGCCACAACCTTTGCTCCGAGAATA
GGTTCTATTGATGAAGACGATGGTTGGTTGTTAACCTTTGTATATGATGAAAAAGAGAAACATTCTGAATTATTGGTTAT
AGATGCTCAGGATATTATGGGAGAGCCTGTAGCACGGGTAATGTTACCTCAGAGAGTACCTTATGGTTTTCATGGTACTT
GGGTATCTGAAATGCAGTTGATAGCAAGTAACTAA

Upstream 100 bases:

>100_bases
AGGATCCTTATATGTAAATCTTGACAAGACTATACAGAATCGAAAAGTGGTCATAAGCTTTTAATAGAAGCTTAATTTTT
TTCTATAGGAGCGACTTCTA

Downstream 100 bases:

>100_bases
CAAATAATTAAATAGTTATCTTATCGGCTTTTAGCATTCAGCTATCATCTTTGGGAGCTAAGGGTTAAAATATCCTTCTC
CCACACTCAAAAAAAATGAG

Product: carotenoid oxygenase

Products: NA

Alternate protein names: ACO; 8'-apo-beta-carotenal 15,15'-oxygenase; Diox1 [H]

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MTTTTKFNPYLMSNFAPVSKEITTNNLEIKGELPRDLSGMYLRNGPNPQFTPLGKYDWMDGDGMIHGVRISGGRAEYRNR
YVRTGGFEVEKDLGYAVWSGRLEPPQMNNPYGPYKNVANNGLTFHNGKLLALWEAGLPYEIRVPSLETTGPYLCDGYLDS
AFTAHPKIDPMTGELIFFGYALDVAPYLKYGIISARGELLQITPINIPVPSGPHDFAITKNYTILMDLPLRFRPEREKQG
LPAWMFETGVPSRFGILPRCGNNEDIHWFEAQPCYMNHILNAYEFEDEIILYGCRMSSTYWYPGTARDPNENIPRMYGWA
FNLKTGAVREGMLDKRPSEFPCINHRFVGRQMRYGYTSRMASLRPLFDGIIKYDFSTGRSLSHDFGEGRYGGATTFAPRI
GSIDEDDGWLLTFVYDEKEKHSELLVIDAQDIMGEPVARVMLPQRVPYGFHGTWVSEMQLIASN

Sequences:

>Translated_464_residues
MTTTTKFNPYLMSNFAPVSKEITTNNLEIKGELPRDLSGMYLRNGPNPQFTPLGKYDWMDGDGMIHGVRISGGRAEYRNR
YVRTGGFEVEKDLGYAVWSGRLEPPQMNNPYGPYKNVANNGLTFHNGKLLALWEAGLPYEIRVPSLETTGPYLCDGYLDS
AFTAHPKIDPMTGELIFFGYALDVAPYLKYGIISARGELLQITPINIPVPSGPHDFAITKNYTILMDLPLRFRPEREKQG
LPAWMFETGVPSRFGILPRCGNNEDIHWFEAQPCYMNHILNAYEFEDEIILYGCRMSSTYWYPGTARDPNENIPRMYGWA
FNLKTGAVREGMLDKRPSEFPCINHRFVGRQMRYGYTSRMASLRPLFDGIIKYDFSTGRSLSHDFGEGRYGGATTFAPRI
GSIDEDDGWLLTFVYDEKEKHSELLVIDAQDIMGEPVARVMLPQRVPYGFHGTWVSEMQLIASN
>Mature_463_residues
TTTTKFNPYLMSNFAPVSKEITTNNLEIKGELPRDLSGMYLRNGPNPQFTPLGKYDWMDGDGMIHGVRISGGRAEYRNRY
VRTGGFEVEKDLGYAVWSGRLEPPQMNNPYGPYKNVANNGLTFHNGKLLALWEAGLPYEIRVPSLETTGPYLCDGYLDSA
FTAHPKIDPMTGELIFFGYALDVAPYLKYGIISARGELLQITPINIPVPSGPHDFAITKNYTILMDLPLRFRPEREKQGL
PAWMFETGVPSRFGILPRCGNNEDIHWFEAQPCYMNHILNAYEFEDEIILYGCRMSSTYWYPGTARDPNENIPRMYGWAF
NLKTGAVREGMLDKRPSEFPCINHRFVGRQMRYGYTSRMASLRPLFDGIIKYDFSTGRSLSHDFGEGRYGGATTFAPRIG
SIDEDDGWLLTFVYDEKEKHSELLVIDAQDIMGEPVARVMLPQRVPYGFHGTWVSEMQLIASN

Specific function: Cleaves a number of carotenals and carotenols in the all-trans configuration at the 15-15' double bond producing retinal or retinol, respectively. Also shows activity toward lycopenals and the corresponding alcohols. Does not cleave beta- carotene or lyco

COG id: COG3670

COG function: function code Q; Lignostilbene-alpha,beta-dioxygenase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid oxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004294 [H]

Pfam domain/function: PF03055 RPE65 [H]

EC number: =1.14.99.41 [H]

Molecular weight: Translated: 52735; Mature: 52603

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTTKFNPYLMSNFAPVSKEITTNNLEIKGELPRDLSGMYLRNGPNPQFTPLGKYDWMD
CCCCCCCCCCEECCCCCCCCEEECCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCC
GDGMIHGVRISGGRAEYRNRYVRTGGFEVEKDLGYAVWSGRLEPPQMNNPYGPYKNVANN
CCCEEEEEEECCCHHHHCCCEEECCCEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHCC
GLTFHNGKLLALWEAGLPYEIRVPSLETTGPYLCDGYLDSAFTAHPKIDPMTGELIFFGY
CEEEECCEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCEECCCCCCCCCCCEEEEEE
ALDVAPYLKYGIISARGELLQITPINIPVPSGPHDFAITKNYTILMDLPLRFRPEREKQG
HHHHHHHHHHHEEECCCCEEEEEEEEEECCCCCCCEEEECCEEEEEECCCCCCCCHHHCC
LPAWMFETGVPSRFGILPRCGNNEDIHWFEAQPCYMNHILNAYEFEDEIILYGCRMSSTY
CCEEEEECCCCHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCEE
WYPGTARDPNENIPRMYGWAFNLKTGAVREGMLDKRPSEFPCINHRFVGRQMRYGYTSRM
ECCCCCCCCCCCCCCEEEEEEECCCCCHHHCHHHCCCCCCCCCCCHHCCCHHHCCHHHHH
ASLRPLFDGIIKYDFSTGRSLSHDFGEGRYGGATTFAPRIGSIDEDDGWLLTFVYDEKEK
HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCC
HSELLVIDAQDIMGEPVARVMLPQRVPYGFHGTWVSEMQLIASN
CCCEEEEECHHHCCCCHHHHHCCCCCCCCCCCCCHHHEEEEECC
>Mature Secondary Structure 
TTTTKFNPYLMSNFAPVSKEITTNNLEIKGELPRDLSGMYLRNGPNPQFTPLGKYDWMD
CCCCCCCCCEECCCCCCCCEEECCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCC
GDGMIHGVRISGGRAEYRNRYVRTGGFEVEKDLGYAVWSGRLEPPQMNNPYGPYKNVANN
CCCEEEEEEECCCHHHHCCCEEECCCEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHCC
GLTFHNGKLLALWEAGLPYEIRVPSLETTGPYLCDGYLDSAFTAHPKIDPMTGELIFFGY
CEEEECCEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCEECCCCCCCCCCCEEEEEE
ALDVAPYLKYGIISARGELLQITPINIPVPSGPHDFAITKNYTILMDLPLRFRPEREKQG
HHHHHHHHHHHEEECCCCEEEEEEEEEECCCCCCCEEEECCEEEEEECCCCCCCCHHHCC
LPAWMFETGVPSRFGILPRCGNNEDIHWFEAQPCYMNHILNAYEFEDEIILYGCRMSSTY
CCEEEEECCCCHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCEE
WYPGTARDPNENIPRMYGWAFNLKTGAVREGMLDKRPSEFPCINHRFVGRQMRYGYTSRM
ECCCCCCCCCCCCCCEEEEEEECCCCCHHHCHHHCCCCCCCCCCCHHCCCHHHCCHHHHH
ASLRPLFDGIIKYDFSTGRSLSHDFGEGRYGGATTFAPRIGSIDEDDGWLLTFVYDEKEK
HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCC
HSELLVIDAQDIMGEPVARVMLPQRVPYGFHGTWVSEMQLIASN
CCCEEEEECHHHCCCCHHHHHCCCCCCCCCCCCCHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]