Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is hisA
Identifier: 113477199
GI number: 113477199
Start: 5722164
End: 5722937
Strand: Reverse
Name: hisA
Synonym: Tery_3731
Alternate gene names: 113477199
Gene position: 5722937-5722164 (Counterclockwise)
Preceding gene: 113477200
Following gene: 113477194
Centisome position: 73.84
GC content: 39.66
Gene sequence:
>774_bases ATGAATATAATTCCAGCGATCGACATATTAGGTGGACGTTGTGTAAGATTGTATCAAGGAGATTATAAGCAAACCCAAAT CTTTAATGATAATCCAGTTGATGTAGCAAAAAGGTGGGCAGATGAAGGGGCAACTAAGCTACACCTAGTAGACTTAGACG CTGCTAAAGTAGGTCAACCTGTCAATCAAAAGACTATTGAAGCAATCATCAAAGCAGTAGATATACCAATACAAGTAGGC GGTGGGTTACGGAACTATTCCACAGTTGCGAGTCTACTTGCTCTTGGAGTACAGCAGGCTATTTTGGGTACTGTTGCTAT AGAACAACCTGAGTTAGTTTCTGATTTTTGCCAAAAGTTTCCTGGTCAAATTATTGTAGGTATTGATGCTAGAGATGGCA AGGTTGCCACTAAAGGTTGGTTAGAAACTTCACAAGTGTTAGCAACTGACCTAGCACTTCAAATGGCCAAATTGAAAGTT GCAGCAATTATCTATACTGATATTCACCGGGATGGTACTCTCAAAGGACCTAATATAGAAGCATTAAGGGAGTTAGCTAC TGCGGTTAGTATTCCAGTAATTGCTTCTGGCGGAATTAGTTCAATTAACGATTTATTAAATTTACTAGCATTAGAAACCA TTGGCGTTAAAGGTGCGATTGTTGGTCGTGCCTTGTATACTGGAGGTATTAGTCTTAAAGAAGCAAATCAAGCAGTAGGT CAAGGGCGTTGGCAAGATGTACCTCCAAATTTGGGCTCTTCTACATTTGTCTAA
Upstream 100 bases:
>100_bases CAGGAGTAAAAATTTCTTTATAGTTTCGATTGTGTATTATGTTAACAGTCGGTGCAACTATTGACAAAGTTAGTAGTTTT GTATACAAAACATAGAATCT
Downstream 100 bases:
>100_bases TCCTAATCAGATAATTGGTGTTGCTCATGGGTAGTTTGTAATACTTCCTTTGATAAAAGCATTCAAGGAGTTAGTTATTG TGGTCGGTATTCAGTGTGAT
Product: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Products: NA
Alternate protein names: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MNIIPAIDILGGRCVRLYQGDYKQTQIFNDNPVDVAKRWADEGATKLHLVDLDAAKVGQPVNQKTIEAIIKAVDIPIQVG GGLRNYSTVASLLALGVQQAILGTVAIEQPELVSDFCQKFPGQIIVGIDARDGKVATKGWLETSQVLATDLALQMAKLKV AAIIYTDIHRDGTLKGPNIEALRELATAVSIPVIASGGISSINDLLNLLALETIGVKGAIVGRALYTGGISLKEANQAVG QGRWQDVPPNLGSSTFV
Sequences:
>Translated_257_residues MNIIPAIDILGGRCVRLYQGDYKQTQIFNDNPVDVAKRWADEGATKLHLVDLDAAKVGQPVNQKTIEAIIKAVDIPIQVG GGLRNYSTVASLLALGVQQAILGTVAIEQPELVSDFCQKFPGQIIVGIDARDGKVATKGWLETSQVLATDLALQMAKLKV AAIIYTDIHRDGTLKGPNIEALRELATAVSIPVIASGGISSINDLLNLLALETIGVKGAIVGRALYTGGISLKEANQAVG QGRWQDVPPNLGSSTFV >Mature_257_residues MNIIPAIDILGGRCVRLYQGDYKQTQIFNDNPVDVAKRWADEGATKLHLVDLDAAKVGQPVNQKTIEAIIKAVDIPIQVG GGLRNYSTVASLLALGVQQAILGTVAIEQPELVSDFCQKFPGQIIVGIDARDGKVATKGWLETSQVLATDLALQMAKLKV AAIIYTDIHRDGTLKGPNIEALRELATAVSIPVIASGGISSINDLLNLLALETIGVKGAIVGRALYTGGISLKEANQAVG QGRWQDVPPNLGSSTFV
Specific function: Histidine biosynthesis; fourth step. [C]
COG id: COG0106
COG function: function code E; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hisA/hisF family
Homologues:
Organism=Escherichia coli, GI87082028, Length=240, Percent_Identity=36.25, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI1788336, Length=244, Percent_Identity=27.0491803278689, Blast_Score=93, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HIS4_TRIEI (Q10Y87)
Other databases:
- EMBL: CP000393 - RefSeq: YP_723260.1 - ProteinModelPortal: Q10Y87 - SMR: Q10Y87 - STRING: Q10Y87 - GeneID: 4243907 - GenomeReviews: CP000393_GR - KEGG: ter:Tery_3731 - NMPDR: fig|203124.1.peg.6013 - eggNOG: COG0106 - HOGENOM: HBG541613 - OMA: SIIYTDI - PhylomeDB: Q10Y87 - ProtClustDB: PRK00748 - BioCyc: TERY203124:TERY_3731-MONOMER - GO: GO:0005737 - HAMAP: MF_01014 - InterPro: IPR013785 - InterPro: IPR006062 - InterPro: IPR006063 - InterPro: IPR023016 - InterPro: IPR011060 - Gene3D: G3DSA:3.20.20.70 - TIGRFAMs: TIGR00007
Pfam domain/function: PF00977 His_biosynth; SSF51366 RibP_bind_barrel
EC number: =5.3.1.16
Molecular weight: Translated: 27215; Mature: 27215
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: ACT_SITE 8-8 ACT_SITE 129-129
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIIPAIDILGGRCVRLYQGDYKQTQIFNDNPVDVAKRWADEGATKLHLVDLDAAKVGQP CCCCCCHHHCCCEEEEEECCCCCCCEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHCCC VNQKTIEAIIKAVDIPIQVGGGLRNYSTVASLLALGVQQAILGTVAIEQPELVSDFCQKF CCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC PGQIIVGIDARDGKVATKGWLETSQVLATDLALQMAKLKVAAIIYTDIHRDGTLKGPNIE CCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHH ALRELATAVSIPVIASGGISSINDLLNLLALETIGVKGAIVGRALYTGGISLKEANQAVG HHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC QGRWQDVPPNLGSSTFV CCCCCCCCCCCCCCCCC >Mature Secondary Structure MNIIPAIDILGGRCVRLYQGDYKQTQIFNDNPVDVAKRWADEGATKLHLVDLDAAKVGQP CCCCCCHHHCCCEEEEEECCCCCCCEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHCCC VNQKTIEAIIKAVDIPIQVGGGLRNYSTVASLLALGVQQAILGTVAIEQPELVSDFCQKF CCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC PGQIIVGIDARDGKVATKGWLETSQVLATDLALQMAKLKVAAIIYTDIHRDGTLKGPNIE CCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHH ALRELATAVSIPVIASGGISSINDLLNLLALETIGVKGAIVGRALYTGGISLKEANQAVG HHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC QGRWQDVPPNLGSSTFV CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA