| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113477140
Identifier: 113477140
GI number: 113477140
Start: 5626403
End: 5627158
Strand: Reverse
Name: 113477140
Synonym: Tery_3666
Alternate gene names: NA
Gene position: 5627158-5626403 (Counterclockwise)
Preceding gene: 113477141
Following gene: 113477138
Centisome position: 72.61
GC content: 37.17
Gene sequence:
>756_bases ATGCAGTCAGTACTCAATCAGTTTAATATTAGCATTCATCGCGTTCGAGAATTGATAGCCCTTCACAATTCACTCAAAAC TCAAGCTACTAATACTTTATATCTATCAGATATTCTCAGAGCAGCTTTAGTTCTTGCAGTCAGCGCTTTAGACTACTATA TTCACGAAGTCGTGACTTTAGGAATGTTGGAAATTTATCAAGGCCGACGTTCTGAACCTCAGTCTAGCAAACAATCAGCT TTTGCTCGCTTTCAAGTTTCCCTTGGTGCTGCTCGTCAAGACCGAATGCTAGCGATAGATATCGGATCTTGGCTGGAAGA TGAGTTTCTACAAAACTATGGTGATGAGTTTCTACAGCAGTCTCATACAGTGAAATCTCTAACTCAACCTATTTCTGATA TGATGCTTAATAAGTTAAATGGTAATTCTTGGCTAGAGCAGGAAATTCGCAAAAGTCTTGGATACAAGAGTTTTCAGCAA CCAGATAAAATAGCTGATGGGATTAGACTTATTTCAGACAAAAAATTATGGGACGAAGTTGGTGCTCAAATGGGTAAACC TAAGTCAGAAGATATCAAACAAATTAAAGAACAGCTTAGTTTTATAGTAGAACGTAGGAATAAAATTGCTCATGAAGCTG ACATAGATCCTAGCTATAATATAGGAGAGCGTTGGCCTATAGATGAAGATATGGTTAATGATGCAGTAAATTTTATCGAG GGGGTTGTTGATAGTATTCATCAAGTTCTATTTTGA
Upstream 100 bases:
>100_bases CAAACAGGAGTTGTTTTGCGGAATAATCAAAACAAACAAAAAGAATTTCGAGAAACCTTTTCACAACTGGCAGAAAAAAT TATTGGACTAACCACTTCCC
Downstream 100 bases:
>100_bases TCCTGATGCCACTAAAGCAGACATAGGTAAAACCAACTTATTTTGATCAAAATAAGGCTGTGATATTTCCTGAGAGCCCT ACTTAATTGATGAACTACAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MQSVLNQFNISIHRVRELIALHNSLKTQATNTLYLSDILRAALVLAVSALDYYIHEVVTLGMLEIYQGRRSEPQSSKQSA FARFQVSLGAARQDRMLAIDIGSWLEDEFLQNYGDEFLQQSHTVKSLTQPISDMMLNKLNGNSWLEQEIRKSLGYKSFQQ PDKIADGIRLISDKKLWDEVGAQMGKPKSEDIKQIKEQLSFIVERRNKIAHEADIDPSYNIGERWPIDEDMVNDAVNFIE GVVDSIHQVLF
Sequences:
>Translated_251_residues MQSVLNQFNISIHRVRELIALHNSLKTQATNTLYLSDILRAALVLAVSALDYYIHEVVTLGMLEIYQGRRSEPQSSKQSA FARFQVSLGAARQDRMLAIDIGSWLEDEFLQNYGDEFLQQSHTVKSLTQPISDMMLNKLNGNSWLEQEIRKSLGYKSFQQ PDKIADGIRLISDKKLWDEVGAQMGKPKSEDIKQIKEQLSFIVERRNKIAHEADIDPSYNIGERWPIDEDMVNDAVNFIE GVVDSIHQVLF >Mature_251_residues MQSVLNQFNISIHRVRELIALHNSLKTQATNTLYLSDILRAALVLAVSALDYYIHEVVTLGMLEIYQGRRSEPQSSKQSA FARFQVSLGAARQDRMLAIDIGSWLEDEFLQNYGDEFLQQSHTVKSLTQPISDMMLNKLNGNSWLEQEIRKSLGYKSFQQ PDKIADGIRLISDKKLWDEVGAQMGKPKSEDIKQIKEQLSFIVERRNKIAHEADIDPSYNIGERWPIDEDMVNDAVNFIE GVVDSIHQVLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28712; Mature: 28712
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSVLNQFNISIHRVRELIALHNSLKTQATNTLYLSDILRAALVLAVSALDYYIHEVVTL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMLEIYQGRRSEPQSSKQSAFARFQVSLGAARQDRMLAIDIGSWLEDEFLQNYGDEFLQQ HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH SHTVKSLTQPISDMMLNKLNGNSWLEQEIRKSLGYKSFQQPDKIADGIRLISDKKLWDEV HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH GAQMGKPKSEDIKQIKEQLSFIVERRNKIAHEADIDPSYNIGERWPIDEDMVNDAVNFIE HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH GVVDSIHQVLF HHHHHHHHHHC >Mature Secondary Structure MQSVLNQFNISIHRVRELIALHNSLKTQATNTLYLSDILRAALVLAVSALDYYIHEVVTL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMLEIYQGRRSEPQSSKQSAFARFQVSLGAARQDRMLAIDIGSWLEDEFLQNYGDEFLQQ HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH SHTVKSLTQPISDMMLNKLNGNSWLEQEIRKSLGYKSFQQPDKIADGIRLISDKKLWDEV HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH GAQMGKPKSEDIKQIKEQLSFIVERRNKIAHEADIDPSYNIGERWPIDEDMVNDAVNFIE HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH GVVDSIHQVLF HHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA