| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113477061
Identifier: 113477061
GI number: 113477061
Start: 5482056
End: 5482604
Strand: Reverse
Name: 113477061
Synonym: Tery_3565
Alternate gene names: NA
Gene position: 5482604-5482056 (Counterclockwise)
Preceding gene: 113477068
Following gene: 113477060
Centisome position: 70.74
GC content: 32.6
Gene sequence:
>549_bases ATGACTAACACCGAAATACAAATACCAGAATTATCCAAATTAGAATATTTACCTTATGTTGATTCCGCCGGAAAATTACC ATTTTCTTTACAAGGAAAAATAGGTGTTTATGGAATTTTTGACCAGGAAAAAAAGCTACTATTTGTAGGCTATTCTCGTG ATGTATATCAGAGTCTTAAACTACATTTAGTCCGTCAACCTAATAGTTGCTATTGGCTAAAAGTACAAACTATTGAACGC CCAAATCGTACTATATTAGAAGGTATAAAAGCAGCTTGGATTAATGAAAATGGCTCCCTACCTATAGGCAATGGTACAGC AGAAGCAAAATGGAATCAACCCATAGATACTAAACAAGAAATGACTGAAGCAGAAAGAGTACAATATCAAGATCCATTAA TTGATGAAGTAGCTAAAGAAAAACTGCTAAAAAACATAGCTAGGCGAGTAGAAACTAATATTTTAGAGGTATTAAAAACT AGAGGTTTACAAGAAAATATTCGTTTTAATCCTAAACTGAAAGCAACTGGTTTGTTAGACTTGAAGTAA
Upstream 100 bases:
>100_bases GTATTACATAAATATAGAAAATAAAAATTAACTTTAGTGGGAGGTATTGATAACTGATAAATCATAATTTATGACTCATA ATTTATAACTCATAACTGAA
Downstream 100 bases:
>100_bases GCACTCAGCTATCAGCTATTAGCCATCAGCTATGGAGAAATAGAAAAGGGAAAAGTTGTTGAGAAATTGAGAGGGAATTA AAACTTGAAAGATCAATAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MTNTEIQIPELSKLEYLPYVDSAGKLPFSLQGKIGVYGIFDQEKKLLFVGYSRDVYQSLKLHLVRQPNSCYWLKVQTIER PNRTILEGIKAAWINENGSLPIGNGTAEAKWNQPIDTKQEMTEAERVQYQDPLIDEVAKEKLLKNIARRVETNILEVLKT RGLQENIRFNPKLKATGLLDLK
Sequences:
>Translated_182_residues MTNTEIQIPELSKLEYLPYVDSAGKLPFSLQGKIGVYGIFDQEKKLLFVGYSRDVYQSLKLHLVRQPNSCYWLKVQTIER PNRTILEGIKAAWINENGSLPIGNGTAEAKWNQPIDTKQEMTEAERVQYQDPLIDEVAKEKLLKNIARRVETNILEVLKT RGLQENIRFNPKLKATGLLDLK >Mature_181_residues TNTEIQIPELSKLEYLPYVDSAGKLPFSLQGKIGVYGIFDQEKKLLFVGYSRDVYQSLKLHLVRQPNSCYWLKVQTIERP NRTILEGIKAAWINENGSLPIGNGTAEAKWNQPIDTKQEMTEAERVQYQDPLIDEVAKEKLLKNIARRVETNILEVLKTR GLQENIRFNPKLKATGLLDLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20871; Mature: 20740
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNTEIQIPELSKLEYLPYVDSAGKLPFSLQGKIGVYGIFDQEKKLLFVGYSRDVYQSLK CCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCEEEEEEECCCCEEEEEECCHHHHHHHH LHLVRQPNSCYWLKVQTIERPNRTILEGIKAAWINENGSLPIGNGTAEAKWNQPIDTKQE EEEEECCCCEEEEEEEECCCCCHHHHHHHHHEEECCCCCEECCCCCCCCCCCCCCCCHHH MTEAERVQYQDPLIDEVAKEKLLKNIARRVETNILEVLKTRGLQENIRFNPKLKATGLLD HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEE LK CC >Mature Secondary Structure TNTEIQIPELSKLEYLPYVDSAGKLPFSLQGKIGVYGIFDQEKKLLFVGYSRDVYQSLK CCCCCCCCCCCCEEECCCCCCCCCCCEEECCCEEEEEEECCCCEEEEEECCHHHHHHHH LHLVRQPNSCYWLKVQTIERPNRTILEGIKAAWINENGSLPIGNGTAEAKWNQPIDTKQE EEEEECCCCEEEEEEEECCCCCHHHHHHHHHEEECCCCCEECCCCCCCCCCCCCCCCHHH MTEAERVQYQDPLIDEVAKEKLLKNIARRVETNILEVLKTRGLQENIRFNPKLKATGLLD HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEE LK CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA