Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113477048
Identifier: 113477048
GI number: 113477048
Start: 5471840
End: 5472277
Strand: Reverse
Name: 113477048
Synonym: Tery_3551
Alternate gene names: NA
Gene position: 5472277-5471840 (Counterclockwise)
Preceding gene: 113477049
Following gene: 113477046
Centisome position: 70.61
GC content: 31.74
Gene sequence:
>438_bases ATGAATCAAGTTCTTTTTCATTTAGCCTTTCCGGTGAATAATATTACCAAAACGAAAGAATTCTATAGCAATGGTTTAGG TTGTAAAGTTGGGCGAGAATCTCGAAATTCAGTGATTTTAAATCTTTATGGTAATCAAATTGTTGCTCATATTGCTAAAG AAACTTTAGAACCACAAAAAGGAATTTACCCCAGACATTTTGGTTTAGTTTTTAGCCTAGAAAGTGACTGGGAAGCTTTA TTAGAACGTGCTCAAAAAAATAAATTAAAATTCTATCAGCAACCTAAGCGGAGGTTTACAAATTCTCCTTTGGAACATCG TACTTTTTTCCTTGAAGATCCATTTTATAACTTGCTAGAATTCAAATATTATTGTCATCAAGAAGCTATTTTTGGCTGTA ATGACCATAAAGAAGTTGGCGATATTATAGCAGTTTAA
Upstream 100 bases:
>100_bases TATTAGATAACATTATATCTACTCGCTAAAAACATCTATTGTCATTTTAACTTAATATTTACCAGAGAAAATAATACTTA CACATTACAAGGAAATAACT
Downstream 100 bases:
>100_bases ATTATTTTTATATTCAATAATTAATTAAACATTGAGGTATTATAGCAATCCTATCTTAATTTGTGAAATAGATGACCGAC TAGAAGGTAAAGTACTTATG
Product: glyoxalase/bleomycin resistance protein/dioxygenase
Products: NA
Alternate protein names: Glyoxalase Family Protein; Ring-Cleaving Dioxygenase; Dioxygenase; Extradiol Dioxygenase Family Protein; Dioxygenase/Glyoxalase; Glyoxalase Domain Protein; Glyoxalase/Bleomycin Resistance Family Protein; Dioxygenase Of Extradiol Dioxygenase Family Protein; Glyoxalase/Bleomycin Resistance Protein; Dioxygenase Protein; Glyoxalase; Glyoxalase/Bleomycin Resistance; Extradiol Family Dioxygenase; Glyoxalase/Extradiol Ring-Cleavage Dioxygenase; Lactoylglutathione Lyase Protein
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MNQVLFHLAFPVNNITKTKEFYSNGLGCKVGRESRNSVILNLYGNQIVAHIAKETLEPQKGIYPRHFGLVFSLESDWEAL LERAQKNKLKFYQQPKRRFTNSPLEHRTFFLEDPFYNLLEFKYYCHQEAIFGCNDHKEVGDIIAV
Sequences:
>Translated_145_residues MNQVLFHLAFPVNNITKTKEFYSNGLGCKVGRESRNSVILNLYGNQIVAHIAKETLEPQKGIYPRHFGLVFSLESDWEAL LERAQKNKLKFYQQPKRRFTNSPLEHRTFFLEDPFYNLLEFKYYCHQEAIFGCNDHKEVGDIIAV >Mature_145_residues MNQVLFHLAFPVNNITKTKEFYSNGLGCKVGRESRNSVILNLYGNQIVAHIAKETLEPQKGIYPRHFGLVFSLESDWEAL LERAQKNKLKFYQQPKRRFTNSPLEHRTFFLEDPFYNLLEFKYYCHQEAIFGCNDHKEVGDIIAV
Specific function: Unknown
COG id: COG3565
COG function: function code R; Predicted dioxygenase of extradiol dioxygenase family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17002; Mature: 17002
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQVLFHLAFPVNNITKTKEFYSNGLGCKVGRESRNSVILNLYGNQIVAHIAKETLEPQK CCCEEEEEECCCCCHHHHHHHHHCCCCCEECCCCCCCEEEEECCHHHHHHHHHHHCCCCC GIYPRHFGLVFSLESDWEALLERAQKNKLKFYQQPKRRFTNSPLEHRTFFLEDPFYNLLE CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEECCCHHHHHH FKYYCHQEAIFGCNDHKEVGDIIAV HHHHHHHHHHCCCCCCHHHHHHHCC >Mature Secondary Structure MNQVLFHLAFPVNNITKTKEFYSNGLGCKVGRESRNSVILNLYGNQIVAHIAKETLEPQK CCCEEEEEECCCCCHHHHHHHHHCCCCCEECCCCCCCEEEEECCHHHHHHHHHHHCCCCC GIYPRHFGLVFSLESDWEALLERAQKNKLKFYQQPKRRFTNSPLEHRTFFLEDPFYNLLE CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEECCCHHHHHH FKYYCHQEAIFGCNDHKEVGDIIAV HHHHHHHHHHCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA