Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113477028
Identifier: 113477028
GI number: 113477028
Start: 5436929
End: 5437588
Strand: Reverse
Name: 113477028
Synonym: Tery_3528
Alternate gene names: NA
Gene position: 5437588-5436929 (Counterclockwise)
Preceding gene: 113477031
Following gene: 113477027
Centisome position: 70.16
GC content: 35.61
Gene sequence:
>660_bases GTGCTTCAGAAAGTGAGCTCGGCTAAAGTTGTCAGACTCAACCTCTATTTTTCTAATAATTTCAGAGCTGACGAGAAATT TTTTGTCGGTTCAGAAAAGTCTCATAAATTTGGAGTGCTTCAGAAAGTGAGCTTGGCTAAAGCTGTCAGACTCAACCTCT ATTTTTCTAATAATTTCAGAGCTGACGAGAAATTTTTTGTCGGTTTAGAAAAGTCTCATAAATTTGGAGTGCTTCAGAAA GTGAGCTTGGCTAAAGCTGTCAGACTCAACCTCTATTTTTCTAATAATTTCAGAGCTGACGAGAAATTTTTTGTCGGTTC AGAAAAGTCTCATAAATTTGGAGTGCTTCAGAAAGTGAGCTTGGCTAAAGCTGTCAGACTCAACCTCTATTTTTCTAATA ATTTCAGAGCTGACGAGAAATTTTTTGTCGGTTCAAGAAAGTCTTATAAATTTAGAGTGCTTCAGAAAGTGAGCTTGGCT AAAGTTGTCAGACTCAACCTCTATTTTTCTAATAATTTCAGAGCTGACGAGAAATTTTTTGTCGGTTTAGAAAAGTCTCA TAAATTTAGAGTGCTTCAGAAAGTGAGCTTGGCTAAAGCTGTCAGACTCAACCTCTATTTTTCTAATAATTTGAGAAATT ATTGGAGTTTCCAAATTTGA
Upstream 100 bases:
>100_bases TAAGCTCTACTTAAGTTATGAGACTCAACCTAAATTATCTAATAATTTCAGAGCTGACGAGAAATTTTTTGTCAGTTAAA AAAAGTCTTAGAAATTTAGA
Downstream 100 bases:
>100_bases CTGATGAGCAATTTTTTGTCGGTTCAAAAAAGTCTCATAAATTTAGAGTGCTTCAGAAAGTGAGCTTGGCTAAAGCTGTC ATACTCAACCTCTATTTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MLQKVSSAKVVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVSLAKAVRLNLYFSNNFRADEKFFVGLEKSHKFGVLQK VSLAKAVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVSLAKAVRLNLYFSNNFRADEKFFVGSRKSYKFRVLQKVSLA KVVRLNLYFSNNFRADEKFFVGLEKSHKFRVLQKVSLAKAVRLNLYFSNNLRNYWSFQI
Sequences:
>Translated_219_residues MLQKVSSAKVVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVSLAKAVRLNLYFSNNFRADEKFFVGLEKSHKFGVLQK VSLAKAVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVSLAKAVRLNLYFSNNFRADEKFFVGSRKSYKFRVLQKVSLA KVVRLNLYFSNNFRADEKFFVGLEKSHKFRVLQKVSLAKAVRLNLYFSNNLRNYWSFQI >Mature_219_residues MLQKVSSAKVVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVSLAKAVRLNLYFSNNFRADEKFFVGLEKSHKFGVLQK VSLAKAVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVSLAKAVRLNLYFSNNFRADEKFFVGSRKSYKFRVLQKVSLA KVVRLNLYFSNNFRADEKFFVGLEKSHKFRVLQKVSLAKAVRLNLYFSNNLRNYWSFQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25642; Mature: 25642
Theoretical pI: Translated: 11.17; Mature: 11.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQKVSSAKVVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVSLAKAVRLNLYFSNNFR CCCCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHEEEEEEEEEECCCCC ADEKFFVGLEKSHKFGVLQKVSLAKAVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVS CCCEEEEEECCCCCCCHHHHHHHEEEEEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHH LAKAVRLNLYFSNNFRADEKFFVGSRKSYKFRVLQKVSLAKVVRLNLYFSNNFRADEKFF HEEEEEEEEEECCCCCCCCEEEECCCCCEEEEEHHHHHHEEEEEEEEEECCCCCCCCEEE VGLEKSHKFRVLQKVSLAKAVRLNLYFSNNLRNYWSFQI EEECCCCHHHHHHHHHHEEEEEEEEEEECCCCCEEEECC >Mature Secondary Structure MLQKVSSAKVVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVSLAKAVRLNLYFSNNFR CCCCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHEEEEEEEEEECCCCC ADEKFFVGLEKSHKFGVLQKVSLAKAVRLNLYFSNNFRADEKFFVGSEKSHKFGVLQKVS CCCEEEEEECCCCCCCHHHHHHHEEEEEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHH LAKAVRLNLYFSNNFRADEKFFVGSRKSYKFRVLQKVSLAKVVRLNLYFSNNFRADEKFF HEEEEEEEEEECCCCCCCCEEEECCCCCEEEEEHHHHHHEEEEEEEEEECCCCCCCCEEE VGLEKSHKFRVLQKVSLAKAVRLNLYFSNNLRNYWSFQI EEECCCCHHHHHHHHHHEEEEEEEEEEECCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA