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The map label for this gene is ndhJ

Identifier: 113477001

GI number: 113477001

Start: 5400781

End: 5401284

Strand: Reverse

Name: ndhJ

Synonym: Tery_3499

Alternate gene names: 113477001

Gene position: 5401284-5400781 (Counterclockwise)

Preceding gene: 113477002

Following gene: 113477000

Centisome position: 69.69

GC content: 38.49

Gene sequence:

>504_bases
TTGGCTGAATCTGAAGCTCCAATTATTGAAGCCGGAAAAGTTTCAAAATGGCTCACAGACAATGGCTTTGATCATGAATT
TCTAGCACCTGATCATCAGGGAATAGAAATTATCAAAGGTAATAGGGATTTTTTAATTCCTCTAGCCACAGCTTTATATG
CTTATGGGTTTAACTATTTACAATGTCAATGTGCTTATGATGCTGGACCTGGAGAAGACTTGGTAAGTATGTATCATTTG
GTCAAAGTCAGTGACGATGTAGAACAGCCAGAAGAAATACGCTTAAAGGTATTCGTACCCAGAGATGATCCTAGACTTCC
TTCCGTTTACTGGATTTGGAAGTCAGCGGATTTCCAAGAGCGAGAATCTTATGATATGTATGGCATTATCTACGAAGGAC
ATCCTAATCTCAAACGAATTTTGATGCCGGAAGACTGGGTAGGTTGGCCATTACGTAAGGATTATATTTCTCCTGAATTT
TACGAATTACAAGATGCCTATTAA

Upstream 100 bases:

>100_bases
CAAACATCTGACCGTAAAGCAGTGCCAAAAGAGCTAGCTGAAGCAATAGGTATGCCAGTATCACCTGCACTGCAAGCTAT
ACCAAAAGAGGAGGTAAGTC

Downstream 100 bases:

>100_bases
AATTTAGGTCAAAAAAAATTGGTCCAGGCTCAAAAAGCTATTAAGGAAGTTCTGGCCAAGAGCTCAGCTCAGGTACGATA
TCTTATTGTTTTGGAAATAC

Product: NADH dehydrogenase subunit J

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit J; NADH-plastoquinone oxidoreductase subunit J; NDH-1 subunit J; NDH-J

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MAESEAPIIEAGKVSKWLTDNGFDHEFLAPDHQGIEIIKGNRDFLIPLATALYAYGFNYLQCQCAYDAGPGEDLVSMYHL
VKVSDDVEQPEEIRLKVFVPRDDPRLPSVYWIWKSADFQERESYDMYGIIYEGHPNLKRILMPEDWVGWPLRKDYISPEF
YELQDAY

Sequences:

>Translated_167_residues
MAESEAPIIEAGKVSKWLTDNGFDHEFLAPDHQGIEIIKGNRDFLIPLATALYAYGFNYLQCQCAYDAGPGEDLVSMYHL
VKVSDDVEQPEEIRLKVFVPRDDPRLPSVYWIWKSADFQERESYDMYGIIYEGHPNLKRILMPEDWVGWPLRKDYISPEF
YELQDAY
>Mature_166_residues
AESEAPIIEAGKVSKWLTDNGFDHEFLAPDHQGIEIIKGNRDFLIPLATALYAYGFNYLQCQCAYDAGPGEDLVSMYHLV
KVSDDVEQPEEIRLKVFVPRDDPRLPSVYWIWKSADFQERESYDMYGIIYEGHPNLKRILMPEDWVGWPLRKDYISPEFY
ELQDAY

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0852

COG function: function code C; NADH:ubiquinone oxidoreductase 27 kD subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 30 kDa subunit family

Homologues:

Organism=Escherichia coli, GI145693162, Length=86, Percent_Identity=40.6976744186046, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDHJ_TRIEI (Q10YT5)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_723062.1
- ProteinModelPortal:   Q10YT5
- SMR:   Q10YT5
- STRING:   Q10YT5
- GeneID:   4244499
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_3499
- NMPDR:   fig|203124.1.peg.1656
- eggNOG:   COG0852
- HOGENOM:   HBG727675
- OMA:   YELQDAY
- ProtClustDB:   PRK12494
- BioCyc:   TERY203124:TERY_3499-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01357
- InterPro:   IPR010218
- InterPro:   IPR001268
- InterPro:   IPR020396
- ProDom:   PD001581

Pfam domain/function: PF00329 Complex1_30kDa

EC number: 1.6.5.3

Molecular weight: Translated: 19475; Mature: 19344

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS00542 COMPLEX1_30K

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESEAPIIEAGKVSKWLTDNGFDHEFLAPDHQGIEIIKGNRDFLIPLATALYAYGFNYL
CCCCCCCEEECCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHCCCCEE
QCQCAYDAGPGEDLVSMYHLVKVSDDVEQPEEIRLKVFVPRDDPRLPSVYWIWKSADFQE
EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCC
RESYDMYGIIYEGHPNLKRILMPEDWVGWPLRKDYISPEFYELQDAY
CCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCCCCEECCCCC
>Mature Secondary Structure 
AESEAPIIEAGKVSKWLTDNGFDHEFLAPDHQGIEIIKGNRDFLIPLATALYAYGFNYL
CCCCCCEEECCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHCCCCEE
QCQCAYDAGPGEDLVSMYHLVKVSDDVEQPEEIRLKVFVPRDDPRLPSVYWIWKSADFQE
EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCC
RESYDMYGIIYEGHPNLKRILMPEDWVGWPLRKDYISPEFYELQDAY
CCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA