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The map label for this gene is rbfA

Identifier: 113476475

GI number: 113476475

Start: 4502936

End: 4503349

Strand: Reverse

Name: rbfA

Synonym: Tery_2895

Alternate gene names: 113476475

Gene position: 4503349-4502936 (Counterclockwise)

Preceding gene: 113476477

Following gene: 113476474

Centisome position: 58.11

GC content: 40.34

Gene sequence:

>414_bases
ATGGCTATAGCTCGTCGCATTTCCCGGATTGCTTCATTAATCAAGCAAGAAATCAGCCAGATGTTGCTCCATGGTATCAA
AGATAACCGCGTAGGCATTGGTATGGTCAGCGTCACAGATGTAGATGTTTCTGGAGACTTACAACATGCTAAAGTATTTG
TAAGTATCTATGGATCTGACGAAGTAAGATCGCAAACTATGGCAGGTTTAAGGTCTGCAACTGGATATGTCCGAAGTGAA
TTGGGTAAAAGAATACGTATGCGTAGAACTCCAGAAGTTATCTTTGTTGAAGACCGTTCTCTAGAGCGTGGGACAGAAAT
TTTATCACTTTTAAATAAGCTTTCTCAAGAACGACAACAACAGGAAATAGAAGACATTACCCATAAAGAGTCCCACCAAG
ACACAATAGAGTAA

Upstream 100 bases:

>100_bases
ACCTTGCCTGCTAGAATGGAGTTTAAATAAAATCTTTGTAGAACGAGCATAAAGTATTAAAATGAATATGGTTAGTATAA
AATTATAGAGGGTAATGATT

Downstream 100 bases:

>100_bases
ATAATTCTTAAATTATCCATTACTAAACTATGAATTTAGCATAAAAAGTTGATCCTATGGCCGCATTGATGGCCTCTGGC
TATTGGTTTGACTATCAAAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAIARRISRIASLIKQEISQMLLHGIKDNRVGIGMVSVTDVDVSGDLQHAKVFVSIYGSDEVRSQTMAGLRSATGYVRSE
LGKRIRMRRTPEVIFVEDRSLERGTEILSLLNKLSQERQQQEIEDITHKESHQDTIE

Sequences:

>Translated_137_residues
MAIARRISRIASLIKQEISQMLLHGIKDNRVGIGMVSVTDVDVSGDLQHAKVFVSIYGSDEVRSQTMAGLRSATGYVRSE
LGKRIRMRRTPEVIFVEDRSLERGTEILSLLNKLSQERQQQEIEDITHKESHQDTIE
>Mature_136_residues
AIARRISRIASLIKQEISQMLLHGIKDNRVGIGMVSVTDVDVSGDLQHAKVFVSIYGSDEVRSQTMAGLRSATGYVRSEL
GKRIRMRRTPEVIFVEDRSLERGTEILSLLNKLSQERQQQEIEDITHKESHQDTIE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=128, Percent_Identity=33.59375, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_TRIEI (Q110L1)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_722536.1
- ProteinModelPortal:   Q110L1
- STRING:   Q110L1
- GeneID:   4244732
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_2895
- NMPDR:   fig|203124.1.peg.1853
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q110L1
- BioCyc:   TERY203124:TERY_2895-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15534; Mature: 15403

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIARRISRIASLIKQEISQMLLHGIKDNRVGIGMVSVTDVDVSGDLQHAKVFVSIYGSD
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHHEEEEEEECCH
EVRSQTMAGLRSATGYVRSELGKRIRMRRTPEVIFVEDRSLERGTEILSLLNKLSQERQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
QEIEDITHKESHQDTIE
HHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AIARRISRIASLIKQEISQMLLHGIKDNRVGIGMVSVTDVDVSGDLQHAKVFVSIYGSD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHHEEEEEEECCH
EVRSQTMAGLRSATGYVRSELGKRIRMRRTPEVIFVEDRSLERGTEILSLLNKLSQERQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
QEIEDITHKESHQDTIE
HHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA