| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476437
Identifier: 113476437
GI number: 113476437
Start: 4433940
End: 4434800
Strand: Reverse
Name: 113476437
Synonym: Tery_2851
Alternate gene names: NA
Gene position: 4434800-4433940 (Counterclockwise)
Preceding gene: 113476438
Following gene: 113476436
Centisome position: 57.22
GC content: 29.5
Gene sequence:
>861_bases ATGCAAAAAATTAAGAGAAATAATATAGAAGTATTCAAAAAATGTATAGAACAATCATCAAACCATATGTCTTGTTTCTT TACTGAAACTTTGGTCAGGTTACTATTATCTTATGTGCCAATGCTTGATTATATAACTAAATATAATATCCAACCAAGAA AAGCTGGAAGTTTTGGCTCTGGAAGTTGCTCACATGAAGTATTTCTTAGTCAAGCATTTCCTAATATGCAGATGTTTTGT TTCGATAAATCTTCAAAATATATACCTAAATATAATTGGAATTATATACTTGAGAATAACAATATTGAGTTTGTAGACGT AGATTTAGATCATTATGAGTGGAGCAATTTGCAATCAAAGTTTGATTATACTTTTTCAATACAAACTTTGGAACACATAG AAGATTATCAAAGTGCGCTTGTCAACTTAAGTTCTTGTGTTATGCCTGGAGGATATATTTATGTAGATACTCCACATTAT TCAGAAAAGGATGAACAAGAATCTTCGGATTATTTAGTAAACGAAAGAAAAAGGCAGTGGGATAAACATAAGCACTACCA TTTAGGTTTTTCTCGAAAAAGAATGATTGATAGATTAGGCAATCTTGGATTTGAAATCATAGATAGCGGGTATTATTCAT ACCATGAAGGTGATACAGAATTATTAAAAATAATTAGAAGTTCGGGTATATATGCTAAAGTTAAGGCAGAACCACTTTTG GCTATATTTATTAGCTATTTATTACAAAACATACTATCAAAGTACGAAGTTAAATATAGAAATATATTTGACACAATAGA TGAGGCAATGAATCAAAATCGTGTTGCCTCTGCTATTAGAATATTGGCTAGAAAAATTTAG
Upstream 100 bases:
>100_bases CCAGTTATATTTCAAATTGTTTGGTATGGTGGTGAAGAAGATTTAAACATTACCTTGTAAGAGTTTTTAATAATTTATTA AATAAAAAAAATATCAAATT
Downstream 100 bases:
>100_bases TTTTTAGAGTGATTTTTAGACAAATAATAAAAAACAAATAATATATCATAACAAGATGCAAATATCGCTTAAAGCAAGGT TGAATATTATTAAATATCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MQKIKRNNIEVFKKCIEQSSNHMSCFFTETLVRLLLSYVPMLDYITKYNIQPRKAGSFGSGSCSHEVFLSQAFPNMQMFC FDKSSKYIPKYNWNYILENNNIEFVDVDLDHYEWSNLQSKFDYTFSIQTLEHIEDYQSALVNLSSCVMPGGYIYVDTPHY SEKDEQESSDYLVNERKRQWDKHKHYHLGFSRKRMIDRLGNLGFEIIDSGYYSYHEGDTELLKIIRSSGIYAKVKAEPLL AIFISYLLQNILSKYEVKYRNIFDTIDEAMNQNRVASAIRILARKI
Sequences:
>Translated_286_residues MQKIKRNNIEVFKKCIEQSSNHMSCFFTETLVRLLLSYVPMLDYITKYNIQPRKAGSFGSGSCSHEVFLSQAFPNMQMFC FDKSSKYIPKYNWNYILENNNIEFVDVDLDHYEWSNLQSKFDYTFSIQTLEHIEDYQSALVNLSSCVMPGGYIYVDTPHY SEKDEQESSDYLVNERKRQWDKHKHYHLGFSRKRMIDRLGNLGFEIIDSGYYSYHEGDTELLKIIRSSGIYAKVKAEPLL AIFISYLLQNILSKYEVKYRNIFDTIDEAMNQNRVASAIRILARKI >Mature_286_residues MQKIKRNNIEVFKKCIEQSSNHMSCFFTETLVRLLLSYVPMLDYITKYNIQPRKAGSFGSGSCSHEVFLSQAFPNMQMFC FDKSSKYIPKYNWNYILENNNIEFVDVDLDHYEWSNLQSKFDYTFSIQTLEHIEDYQSALVNLSSCVMPGGYIYVDTPHY SEKDEQESSDYLVNERKRQWDKHKHYHLGFSRKRMIDRLGNLGFEIIDSGYYSYHEGDTELLKIIRSSGIYAKVKAEPLL AIFISYLLQNILSKYEVKYRNIFDTIDEAMNQNRVASAIRILARKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33718; Mature: 33718
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKIKRNNIEVFKKCIEQSSNHMSCFFTETLVRLLLSYVPMLDYITKYNIQPRKAGSFGS CCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GSCSHEVFLSQAFPNMQMFCFDKSSKYIPKYNWNYILENNNIEFVDVDLDHYEWSNLQSK CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHCHHHH FDYTFSIQTLEHIEDYQSALVNLSSCVMPGGYIYVDTPHYSEKDEQESSDYLVNERKRQW CCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH DKHKHYHLGFSRKRMIDRLGNLGFEIIDSGYYSYHEGDTELLKIIRSSGIYAKVKAEPLL HHCCCEECCCHHHHHHHHHHCCCCEEHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHH AIFISYLLQNILSKYEVKYRNIFDTIDEAMNQNRVASAIRILARKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC >Mature Secondary Structure MQKIKRNNIEVFKKCIEQSSNHMSCFFTETLVRLLLSYVPMLDYITKYNIQPRKAGSFGS CCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GSCSHEVFLSQAFPNMQMFCFDKSSKYIPKYNWNYILENNNIEFVDVDLDHYEWSNLQSK CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHCHHHH FDYTFSIQTLEHIEDYQSALVNLSSCVMPGGYIYVDTPHYSEKDEQESSDYLVNERKRQW CCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH DKHKHYHLGFSRKRMIDRLGNLGFEIIDSGYYSYHEGDTELLKIIRSSGIYAKVKAEPLL HHCCCEECCCHHHHHHHHHHCCCCEEHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHH AIFISYLLQNILSKYEVKYRNIFDTIDEAMNQNRVASAIRILARKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA