| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476361
Identifier: 113476361
GI number: 113476361
Start: 4287744
End: 4288979
Strand: Reverse
Name: 113476361
Synonym: Tery_2766
Alternate gene names: NA
Gene position: 4288979-4287744 (Counterclockwise)
Preceding gene: 113476362
Following gene: 113476360
Centisome position: 55.34
GC content: 42.39
Gene sequence:
>1236_bases ATGAATGTCGTTGAAGAAGTACCTTTGTTGAAGGTCTTACTGTCTCTTTTTTACAGTTTGCGCCAATATGGCTTGCCTTT GGGAGTTGAAGACTATATGTTAGTGCTGAGGGCATTGCAAGGTGGGTTTGGTATAGGCGATCGCGACTCTTTAGAACGAC TATGTTGTACTTTGTGGACAAAATCTGAACAGGAGGCCCGCCTGTTACATCAACTTCTAGGTCGGGCAATAACCAATGCT CCTTCTTCTGCTGAATTACCACAACCTGTCGAAGATACACCGAATCCCTCCCCAACTAGCGCTTCAACTAGACCTGTATC AAAGGAGTCTGAGGAAGTTATGGACTCTTCGACTTTACCATCTACAGCGACGCCTGTTCGCAACATATCTGAGCAACTTG AGGAAAAAGCTCCATTAAAAGAGCCAGAAATACCTGTGTCAAAACCGAGTCCATTGACTGATATTCCCCTAGAAATAGAT GAACCAGAACTGGTCATTCAAGCTATCCGACATTATAATAGGTCTAATGAAATGATTTCTGAATACCAAGATCTAGCTGC TCAATACCTGCCAGTGACCCCTCGGCAGATTAAGCAGAGTTGGCGTTTTTTAAGTCGTTCAGTCCCCCAAGGTATATCGG ACAAGTTGAATGTACCAGCTACGGTAGCCAAGATTTGTCAGCAATGCATCTTAATTGAAGCGGTGCTGATGCCAAATTAT GTAAATCGAGTTAAACTTGTGTTACTGGTTGATCAAGGTGGCTCAATGATTCCTTTTCATCATTTATCCCGTCAATTAAT AGATAAAGCTCGACGGGGTGGAAATATTGAGCAGGCGAGTGTTTATTATTTTTATAATTATCCTGAAATATATTTTTATA GTGACCCAACTCGCCTCAAAGCTCAACTAATTACAGATATTTTAGGAGCTATCGATGAAAGAGCAGGAGTACTTATGGTC AGTGATGCTGGAGCTGCCAGGAGTAATTATAACCCAGAGCGAATTGAGTGCACCCAGAGGTTTATTGAACAACTTCGGCA GTCAGTCCGTTATTATGCTTGGCTAAATCCTATGCCTAATGATAGTTGGCAAGGCACGACTGCTGGGGAAATTGCTCGGT TTGTGCCAATGTTTGAGATGAGTCCTCAAGGATTTAATGCTGCTATCAATGCTTTGCGTGGTCGCTATGTGTATGGGAAA GATTTTTATGAGTTGAGCCGGCAAAAATCATTATGA
Upstream 100 bases:
>100_bases TATTAGGGAAGCTAAACGGTGAACTGCCTTTTGCTCAAGTTCTACTTAAGTATTGGCATGATTATAGAGAATATTTATAC TCCTCCCAGGAGGAAAGAAA
Downstream 100 bases:
>100_bases ATTCAACTAAAGCAATAGATTCGGAAATAGCTGTTGAGAGGGTGGTAGGATTTGCCCAACAATTCGACGGTACACATCTT GATTTAGCTTGTCATGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: VWA Domain Containing CoxE-Like Protein; Cytoplasmic Protein
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MNVVEEVPLLKVLLSLFYSLRQYGLPLGVEDYMLVLRALQGGFGIGDRDSLERLCCTLWTKSEQEARLLHQLLGRAITNA PSSAELPQPVEDTPNPSPTSASTRPVSKESEEVMDSSTLPSTATPVRNISEQLEEKAPLKEPEIPVSKPSPLTDIPLEID EPELVIQAIRHYNRSNEMISEYQDLAAQYLPVTPRQIKQSWRFLSRSVPQGISDKLNVPATVAKICQQCILIEAVLMPNY VNRVKLVLLVDQGGSMIPFHHLSRQLIDKARRGGNIEQASVYYFYNYPEIYFYSDPTRLKAQLITDILGAIDERAGVLMV SDAGAARSNYNPERIECTQRFIEQLRQSVRYYAWLNPMPNDSWQGTTAGEIARFVPMFEMSPQGFNAAINALRGRYVYGK DFYELSRQKSL
Sequences:
>Translated_411_residues MNVVEEVPLLKVLLSLFYSLRQYGLPLGVEDYMLVLRALQGGFGIGDRDSLERLCCTLWTKSEQEARLLHQLLGRAITNA PSSAELPQPVEDTPNPSPTSASTRPVSKESEEVMDSSTLPSTATPVRNISEQLEEKAPLKEPEIPVSKPSPLTDIPLEID EPELVIQAIRHYNRSNEMISEYQDLAAQYLPVTPRQIKQSWRFLSRSVPQGISDKLNVPATVAKICQQCILIEAVLMPNY VNRVKLVLLVDQGGSMIPFHHLSRQLIDKARRGGNIEQASVYYFYNYPEIYFYSDPTRLKAQLITDILGAIDERAGVLMV SDAGAARSNYNPERIECTQRFIEQLRQSVRYYAWLNPMPNDSWQGTTAGEIARFVPMFEMSPQGFNAAINALRGRYVYGK DFYELSRQKSL >Mature_411_residues MNVVEEVPLLKVLLSLFYSLRQYGLPLGVEDYMLVLRALQGGFGIGDRDSLERLCCTLWTKSEQEARLLHQLLGRAITNA PSSAELPQPVEDTPNPSPTSASTRPVSKESEEVMDSSTLPSTATPVRNISEQLEEKAPLKEPEIPVSKPSPLTDIPLEID EPELVIQAIRHYNRSNEMISEYQDLAAQYLPVTPRQIKQSWRFLSRSVPQGISDKLNVPATVAKICQQCILIEAVLMPNY VNRVKLVLLVDQGGSMIPFHHLSRQLIDKARRGGNIEQASVYYFYNYPEIYFYSDPTRLKAQLITDILGAIDERAGVLMV SDAGAARSNYNPERIECTQRFIEQLRQSVRYYAWLNPMPNDSWQGTTAGEIARFVPMFEMSPQGFNAAINALRGRYVYGK DFYELSRQKSL
Specific function: Unknown
COG id: COG3825
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46420; Mature: 46420
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVVEEVPLLKVLLSLFYSLRQYGLPLGVEDYMLVLRALQGGFGIGDRDSLERLCCTLWT CCHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC KSEQEARLLHQLLGRAITNAPSSAELPQPVEDTPNPSPTSASTRPVSKESEEVMDSSTLP CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC STATPVRNISEQLEEKAPLKEPEIPVSKPSPLTDIPLEIDEPELVIQAIRHYNRSNEMIS CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH EYQDLAAQYLPVTPRQIKQSWRFLSRSVPQGISDKLNVPATVAKICQQCILIEAVLMPNY HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHH VNRVKLVLLVDQGGSMIPFHHLSRQLIDKARRGGNIEQASVYYFYNYPEIYFYSDPTRLK HCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCHHHH AQLITDILGAIDERAGVLMVSDAGAARSNYNPERIECTQRFIEQLRQSVRYYAWLNPMPN HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DSWQGTTAGEIARFVPMFEMSPQGFNAAINALRGRYVYGKDFYELSRQKSL CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCHHHHHHHHCCC >Mature Secondary Structure MNVVEEVPLLKVLLSLFYSLRQYGLPLGVEDYMLVLRALQGGFGIGDRDSLERLCCTLWT CCHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC KSEQEARLLHQLLGRAITNAPSSAELPQPVEDTPNPSPTSASTRPVSKESEEVMDSSTLP CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC STATPVRNISEQLEEKAPLKEPEIPVSKPSPLTDIPLEIDEPELVIQAIRHYNRSNEMIS CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH EYQDLAAQYLPVTPRQIKQSWRFLSRSVPQGISDKLNVPATVAKICQQCILIEAVLMPNY HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHH VNRVKLVLLVDQGGSMIPFHHLSRQLIDKARRGGNIEQASVYYFYNYPEIYFYSDPTRLK HCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCHHHH AQLITDILGAIDERAGVLMVSDAGAARSNYNPERIECTQRFIEQLRQSVRYYAWLNPMPN HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DSWQGTTAGEIARFVPMFEMSPQGFNAAINALRGRYVYGKDFYELSRQKSL CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA