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The map label for this gene is cpsD [H]

Identifier: 113476289

GI number: 113476289

Start: 4156349

End: 4158544

Strand: Reverse

Name: cpsD [H]

Synonym: Tery_2688

Alternate gene names: 113476289

Gene position: 4158544-4156349 (Counterclockwise)

Preceding gene: 113476290

Following gene: 113476282

Centisome position: 53.66

GC content: 37.16

Gene sequence:

>2196_bases
ATGGCTATACCTATTGTTAAACGTTATTTAATTGTTTTAGAACTATACAAGTGGGTCGGAGTCGCAACTTTTGCACTAGC
ATTAGGTGTTTCAGGAATAGTTGCTATGCGGCCAGTTCCTAAAGCAAAACATACAATTGCAGGTAAACTGATAAATATTC
GTCCTGCAGTATTATTTTCTGAGACTGGTACTAAAATTCAAGAACAAGCTGCCGCAGTTACTACAGAGAGGTTGCTAAAT
GATGAAGTTAGAAAAGTAGTAGCAGAAAAATTTTTGGTAGACCCAAAAATACTGAAATTACGACAGAAAAAAGGTATATA
CACAATATCTTATCAAGATACAGACAAGGCAAAAGCCCTAGAAATAGTAAATATGCTGATGGCAGAAATAGTCAAGCAAA
GCCGAAAAATTAATACTACTTATCAAAGAGCTATTATTGAAGAAGTCAATAAGCGCTTGCCTGCAGCCATTGAAGAATTG
AGAAACACTCAACAAGAACTACAGAAATTTGAGAGAGAAGAAGAAGCTTTGTTGATAACATCAAGAGCAGGTGCTTTACC
AGGAGAGATAGCAGGTAACCGACAACAACAAACTCAGATGAAATTACAGTTAGAAGGGGTGGAAGCTCAAATTAATAGTT
TAGAAGAACAGTTAGGGTTAACTGCAGATCAAGCTTATGTAGCCCGGGCACTAGCAGCAGATCCAATTATAGCAAATCTC
CGAGTAGAGTTGTATCAAGTAGAAAATGAGTTAGATAAATTATTATTAGATTTTACAGAAAAGTATCCACCCGTAGTTGA
GTTGCGTAGGCGAAAACAAGTTGCAGAACAACAACTACAACAACGTGCCGCAGAAGTTTTAGGAGGTAATGGTATTGCAG
CACCATTGAGACAAGTAGAGCAAATTAGAGTTGATGCTTCTTTAGACCCTACAAGACAACAGTTAGCAGAAACTCTAATT
GCTTTAAAAGCTCAAAAAGAGCAGTTACAACGACAATTACAGACAACAATTGAAACTGAGCAAAAATTACAATTAGAGTA
TAGAAATATTCCTAATAAGCAATTAGAACTGACTCAGTTGCAAGAAAAAGTTGCTCTGAAAAAGTCTCGTCTTGATCAGA
TGCGATCTACCTTAGAAGATGCTGAGGTAGCAGAGGCAGAGATAACTAGCAGTTTAACGGTTTCTGAGGAAGCTTATGTT
AGTAAGCTAGGTAAGACAGGAGAAATAGCAATGCCTTTAATGATGGTAGGAGGAGGAATTGCAGGTATAGTTCTTGGTGG
AGGTTTAATTTTTATCTTGGGAATGCTTTCTGGTAAGTTCTATTATTGGGAAGAAATTAAAATAGTTTTAAAAGAAAAAG
AGGTGCCCTTATTGGGAGTATTGCCTGATGTGATAAATTTTGACCCAGATATGAAGTTAGAGAAAATGCCTTTGTTAATA
GAGCGTAATTCACCAGAACTAGAATTCTATGAAAAGTTGCGGACAAACTTGTCTCTTCAGGGAAGTCAAGCTCCAAAAGT
TGTGCTTTTGAGTAGTGGAGTTAAAGGAGAAGGGAAAACATTTTGTGCTTATAATTTAGCGATCGCTGCGGCACGAGCAG
GTAAACGAACACTTCTCATTGAAACCGACTTAAGGTCACCATCAAAAGCTGAGTCCCTCAAAATTTTTCCTGATCCAGAT
AGCTGTGTTGAACCACTCCGTTATTATGGGGATATTAATAGTTGTATTAGACAAGTATTAGAGGTAGAAAACCTTTATAT
TATACCTAGCCCTGCTGTTGTCAAACAACCAGGAAGAATAATAGAATCTAGTGAAATGCAAAAGTTACTTTCAGACTCCC
GACATCGTTTTGATTTTGTCATTCTAGATACTTCTTGTCTGAACCAGAATAATGACGCTTTTATTCTGGAGCCATATACT
GATGGAATGATTATTATAACTCGACCATATTATACTACATCAGGTATACTGACAGAAATTATAGAACAGCTAACAAATGA
CGAAGAAGATGAAGAAAGTACATCTGGGCCAAAATTTTTAGGAGTTATTGTTAACGGAGCAGATATTTCTGCAAGTTTTC
AAGTTAAACCACTGGATGATTTGGATATATCTAATTCCCAGCTTTCTGACCCACCTGCACCCCGTATCGGAGCATCTACA
GCAACAGAAGTGACACAGGTTCAGAGCCGATATTAA

Upstream 100 bases:

>100_bases
GTTTATTATGTAAACACATTCTTTTTTTCACCTTTAGCATAACAAACAGTCTCCAAAAACTCAGTTGTAATATATTCTAT
TTATCAATAAAAATTGGATT

Downstream 100 bases:

>100_bases
TATTATACATCACAGCATTTATCTAAGTGATTTTCTTCTTGTTTGAATTGTGACTACAGTTGACAGCAGCTCAAGGGTTT
AAAGAAAAAAGACGACAGCA

Product: lipopolysaccharide biosynthesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 731; Mature: 730

Protein sequence:

>731_residues
MAIPIVKRYLIVLELYKWVGVATFALALGVSGIVAMRPVPKAKHTIAGKLINIRPAVLFSETGTKIQEQAAAVTTERLLN
DEVRKVVAEKFLVDPKILKLRQKKGIYTISYQDTDKAKALEIVNMLMAEIVKQSRKINTTYQRAIIEEVNKRLPAAIEEL
RNTQQELQKFEREEEALLITSRAGALPGEIAGNRQQQTQMKLQLEGVEAQINSLEEQLGLTADQAYVARALAADPIIANL
RVELYQVENELDKLLLDFTEKYPPVVELRRRKQVAEQQLQQRAAEVLGGNGIAAPLRQVEQIRVDASLDPTRQQLAETLI
ALKAQKEQLQRQLQTTIETEQKLQLEYRNIPNKQLELTQLQEKVALKKSRLDQMRSTLEDAEVAEAEITSSLTVSEEAYV
SKLGKTGEIAMPLMMVGGGIAGIVLGGGLIFILGMLSGKFYYWEEIKIVLKEKEVPLLGVLPDVINFDPDMKLEKMPLLI
ERNSPELEFYEKLRTNLSLQGSQAPKVVLLSSGVKGEGKTFCAYNLAIAAARAGKRTLLIETDLRSPSKAESLKIFPDPD
SCVEPLRYYGDINSCIRQVLEVENLYIIPSPAVVKQPGRIIESSEMQKLLSDSRHRFDFVILDTSCLNQNNDAFILEPYT
DGMIIITRPYYTTSGILTEIIEQLTNDEEDEESTSGPKFLGVIVNGADISASFQVKPLDDLDISNSQLSDPPAPRIGAST
ATEVTQVQSRY

Sequences:

>Translated_731_residues
MAIPIVKRYLIVLELYKWVGVATFALALGVSGIVAMRPVPKAKHTIAGKLINIRPAVLFSETGTKIQEQAAAVTTERLLN
DEVRKVVAEKFLVDPKILKLRQKKGIYTISYQDTDKAKALEIVNMLMAEIVKQSRKINTTYQRAIIEEVNKRLPAAIEEL
RNTQQELQKFEREEEALLITSRAGALPGEIAGNRQQQTQMKLQLEGVEAQINSLEEQLGLTADQAYVARALAADPIIANL
RVELYQVENELDKLLLDFTEKYPPVVELRRRKQVAEQQLQQRAAEVLGGNGIAAPLRQVEQIRVDASLDPTRQQLAETLI
ALKAQKEQLQRQLQTTIETEQKLQLEYRNIPNKQLELTQLQEKVALKKSRLDQMRSTLEDAEVAEAEITSSLTVSEEAYV
SKLGKTGEIAMPLMMVGGGIAGIVLGGGLIFILGMLSGKFYYWEEIKIVLKEKEVPLLGVLPDVINFDPDMKLEKMPLLI
ERNSPELEFYEKLRTNLSLQGSQAPKVVLLSSGVKGEGKTFCAYNLAIAAARAGKRTLLIETDLRSPSKAESLKIFPDPD
SCVEPLRYYGDINSCIRQVLEVENLYIIPSPAVVKQPGRIIESSEMQKLLSDSRHRFDFVILDTSCLNQNNDAFILEPYT
DGMIIITRPYYTTSGILTEIIEQLTNDEEDEESTSGPKFLGVIVNGADISASFQVKPLDDLDISNSQLSDPPAPRIGAST
ATEVTQVQSRY
>Mature_730_residues
AIPIVKRYLIVLELYKWVGVATFALALGVSGIVAMRPVPKAKHTIAGKLINIRPAVLFSETGTKIQEQAAAVTTERLLND
EVRKVVAEKFLVDPKILKLRQKKGIYTISYQDTDKAKALEIVNMLMAEIVKQSRKINTTYQRAIIEEVNKRLPAAIEELR
NTQQELQKFEREEEALLITSRAGALPGEIAGNRQQQTQMKLQLEGVEAQINSLEEQLGLTADQAYVARALAADPIIANLR
VELYQVENELDKLLLDFTEKYPPVVELRRRKQVAEQQLQQRAAEVLGGNGIAAPLRQVEQIRVDASLDPTRQQLAETLIA
LKAQKEQLQRQLQTTIETEQKLQLEYRNIPNKQLELTQLQEKVALKKSRLDQMRSTLEDAEVAEAEITSSLTVSEEAYVS
KLGKTGEIAMPLMMVGGGIAGIVLGGGLIFILGMLSGKFYYWEEIKIVLKEKEVPLLGVLPDVINFDPDMKLEKMPLLIE
RNSPELEFYEKLRTNLSLQGSQAPKVVLLSSGVKGEGKTFCAYNLAIAAARAGKRTLLIETDLRSPSKAESLKIFPDPDS
CVEPLRYYGDINSCIRQVLEVENLYIIPSPAVVKQPGRIIESSEMQKLLSDSRHRFDFVILDTSCLNQNNDAFILEPYTD
GMIIITRPYYTTSGILTEIIEQLTNDEEDEESTSGPKFLGVIVNGADISASFQVKPLDDLDISNSQLSDPPAPRIGASTA
TEVTQVQSRY

Specific function: Involved in the regulation of capsular polysaccharide biosynthesis. Autophosphorylation of CpsD attenuates its activity and reduces the level of encapsulation. May be part of a complex that directs the coordinated polymerization and export to the cell sur

COG id: COG0489

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Inner membrane (Probable) [C]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsD/CapB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR005702 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: =2.7.10.2 [H]

Molecular weight: Translated: 81529; Mature: 81398

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPIVKRYLIVLELYKWVGVATFALALGVSGIVAMRPVPKAKHTIAGKLINIRPAVLFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCEEEEECCEEEEC
ETGTKIQEQAAAVTTERLLNDEVRKVVAEKFLVDPKILKLRQKKGIYTISYQDTDKAKAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCHHHHH
EIVNMLMAEIVKQSRKINTTYQRAIIEEVNKRLPAAIEELRNTQQELQKFEREEEALLIT
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEE
SRAGALPGEIAGNRQQQTQMKLQLEGVEAQINSLEEQLGLTADQAYVARALAADPIIANL
ECCCCCCCHHCCCCHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
RVELYQVENELDKLLLDFTEKYPPVVELRRRKQVAEQQLQQRAAEVLGGNGIAAPLRQVE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
QIRVDASLDPTRQQLAETLIALKAQKEQLQRQLQTTIETEQKLQLEYRNIPNKQLELTQL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
QEKVALKKSRLDQMRSTLEDAEVAEAEITSSLTVSEEAYVSKLGKTGEIAMPLMMVGGGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHCCCCCCHHHHHHHHCCCH
AGIVLGGGLIFILGMLSGKFYYWEEIKIVLKEKEVPLLGVLPDVINFDPDMKLEKMPLLI
HHHHHHHHHHHHHHHHCCCEEEEEHHEEEEECCCCCCEECCHHHHCCCCCCCCCCCCEEE
ERNSPELEFYEKLRTNLSLQGSQAPKVVLLSSGVKGEGKTFCAYNLAIAAARAGKRTLLI
ECCCCCHHHHHHHHHCCEECCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHCCCCEEEEE
ETDLRSPSKAESLKIFPDPDSCVEPLRYYGDINSCIRQVLEVENLYIIPSPAVVKQPGRI
EECCCCCCCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCHHHCCCCCC
IESSEMQKLLSDSRHRFDFVILDTSCLNQNNDAFILEPYTDGMIIITRPYYTTSGILTEI
CCHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHH
IEQLTNDEEDEESTSGPKFLGVIVNGADISASFQVKPLDDLDISNSQLSDPPAPRIGAST
HHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
ATEVTQVQSRY
HHHHHHHHCCC
>Mature Secondary Structure 
AIPIVKRYLIVLELYKWVGVATFALALGVSGIVAMRPVPKAKHTIAGKLINIRPAVLFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCEEEEECCEEEEC
ETGTKIQEQAAAVTTERLLNDEVRKVVAEKFLVDPKILKLRQKKGIYTISYQDTDKAKAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCHHHHH
EIVNMLMAEIVKQSRKINTTYQRAIIEEVNKRLPAAIEELRNTQQELQKFEREEEALLIT
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEE
SRAGALPGEIAGNRQQQTQMKLQLEGVEAQINSLEEQLGLTADQAYVARALAADPIIANL
ECCCCCCCHHCCCCHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
RVELYQVENELDKLLLDFTEKYPPVVELRRRKQVAEQQLQQRAAEVLGGNGIAAPLRQVE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
QIRVDASLDPTRQQLAETLIALKAQKEQLQRQLQTTIETEQKLQLEYRNIPNKQLELTQL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
QEKVALKKSRLDQMRSTLEDAEVAEAEITSSLTVSEEAYVSKLGKTGEIAMPLMMVGGGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHCCCCCCHHHHHHHHCCCH
AGIVLGGGLIFILGMLSGKFYYWEEIKIVLKEKEVPLLGVLPDVINFDPDMKLEKMPLLI
HHHHHHHHHHHHHHHHCCCEEEEEHHEEEEECCCCCCEECCHHHHCCCCCCCCCCCCEEE
ERNSPELEFYEKLRTNLSLQGSQAPKVVLLSSGVKGEGKTFCAYNLAIAAARAGKRTLLI
ECCCCCHHHHHHHHHCCEECCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHCCCCEEEEE
ETDLRSPSKAESLKIFPDPDSCVEPLRYYGDINSCIRQVLEVENLYIIPSPAVVKQPGRI
EECCCCCCCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCHHHCCCCCC
IESSEMQKLLSDSRHRFDFVILDTSCLNQNNDAFILEPYTDGMIIITRPYYTTSGILTEI
CCHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHH
IEQLTNDEEDEESTSGPKFLGVIVNGADISASFQVKPLDDLDISNSQLSDPPAPRIGAST
HHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
ATEVTQVQSRY
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10464185; 11027683 [H]