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The map label for this gene is petJ [H]

Identifier: 113476173

GI number: 113476173

Start: 3958010

End: 3958405

Strand: Reverse

Name: petJ [H]

Synonym: Tery_2561

Alternate gene names: 113476173

Gene position: 3958405-3958010 (Counterclockwise)

Preceding gene: 113476174

Following gene: 113476172

Centisome position: 51.08

GC content: 37.37

Gene sequence:

>396_bases
TTGAAAATAATAAAAACGGATTTAACAATAATCTGTGTTCGTACTGACAGAGAAGAACAAATGAAAAAATTACTATCAAT
TGTGGTCTTAACCATAATGTTTGTTGTTGTTGCGTTACAACCTTCAGCTTTTGCTGCTGATATAGCTAGTGGGAAGGGGG
TATTCCAAGGTAACTGTGCAGCTTGCCATATCGGAGGTAAGAATAACATTAACCCTGCAAAGACTTTACAAAAGTCAGAT
TTAGAAAAATATGGTATGTTTGCAGCGGAGAAAATTATCTACCAGGTGACAAATGGTAAAAATGCAATGCCAGCATTTGG
GCGTCGTCTCAAACCTCAACAAATTGAAAATGTTGCAGCTTATGTTATGGCTCAAGCTGAAGGCGGCTGGAAATAA

Upstream 100 bases:

>100_bases
TAATTTTTAAGAAAAATGAAAAGCATGAAAAACTATTTAATAGTAATTCATCCAATTATTATGTTTGACAAAATGTCTTT
TGACTTAATATTAAACTTCA

Downstream 100 bases:

>100_bases
TTCATACTAAACTAGGAAAAGATAGGAGAGAAAAGTTTTCTAAATCACAAATGAAAGCTTTCTCATCTTGATAATATATT
CCTTAATAGTAGGGGTGAAA

Product: cytochrome c, class I

Products: NA

Alternate protein names: Cytochrome c-553; Cytochrome c553; Soluble cytochrome f [H]

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKIIKTDLTIICVRTDREEQMKKLLSIVVLTIMFVVVALQPSAFAADIASGKGVFQGNCAACHIGGKNNINPAKTLQKSD
LEKYGMFAAEKIIYQVTNGKNAMPAFGRRLKPQQIENVAAYVMAQAEGGWK

Sequences:

>Translated_131_residues
MKIIKTDLTIICVRTDREEQMKKLLSIVVLTIMFVVVALQPSAFAADIASGKGVFQGNCAACHIGGKNNINPAKTLQKSD
LEKYGMFAAEKIIYQVTNGKNAMPAFGRRLKPQQIENVAAYVMAQAEGGWK
>Mature_131_residues
MKIIKTDLTIICVRTDREEQMKKLLSIVVLTIMFVVVALQPSAFAADIASGKGVFQGNCAACHIGGKNNINPAKTLQKSD
LEKYGMFAAEKIIYQVTNGKNAMPAFGRRLKPQQIENVAAYVMAQAEGGWK

Specific function: Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14319; Mature: 14319

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIKTDLTIICVRTDREEQMKKLLSIVVLTIMFVVVALQPSAFAADIASGKGVFQGNCA
CEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCE
ACHIGGKNNINPAKTLQKSDLEKYGMFAAEKIIYQVTNGKNAMPAFGRRLKPQQIENVAA
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHCCCCHHHHHHHHH
YVMAQAEGGWK
HHHHCCCCCCC
>Mature Secondary Structure
MKIIKTDLTIICVRTDREEQMKKLLSIVVLTIMFVVVALQPSAFAADIASGKGVFQGNCA
CEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCE
ACHIGGKNNINPAKTLQKSDLEKYGMFAAEKIIYQVTNGKNAMPAFGRRLKPQQIENVAA
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHCCCCHHHHHHHHH
YVMAQAEGGWK
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA