| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476081
Identifier: 113476081
GI number: 113476081
Start: 3781847
End: 3782293
Strand: Reverse
Name: 113476081
Synonym: Tery_2457
Alternate gene names: NA
Gene position: 3782293-3781847 (Counterclockwise)
Preceding gene: 113476083
Following gene: 113476080
Centisome position: 48.8
GC content: 35.57
Gene sequence:
>447_bases ATGAGTTCCAACAATTTTGACCACAAGGTATCTGCACCTTGCATAATTGACAATGGCATTATTGTCAACAAACGTGATAT GCAAAGACTATTAATAGATTTAGGCAGAGTTAAGTACATCCATACTCAAGATGGCCAAATTCAAAGCCAAGGAGAAGGAT ATATACTAGAAGTATTTGCCGATCATCAACGGTCAACTTTAATTGCAAATCACTCAATATATTTGAATGTATTTAGTTTT GACTACCTAGAACTGAGGAGGTCCCCATGTCAAGAAACTTATTTTAATTTTTTTAATGAAGGACGTCAGTTAAGGCTAAT TCCGCTATCAAACCCCTTGCAAGAAGAAAATAGCAGAAACATTAATGCTGCAGCTTTTGATGCAGTAATGGATCAAGTCT TGTCATCTAACTGGGATCTAGAGTTAGATGATGATTGCCCATTTTAA
Upstream 100 bases:
>100_bases AGAAACTGTGCCAAAATTGGAACAGGAATAGCAATATCTTACAACTGAGAATAAAAAAATTGTTCTGATAACTGTCTACT AAATTAGAGGCTTTTGCTAT
Downstream 100 bases:
>100_bases GGAGAAAGGAAAAATATAAGGGATAGGAGATGTTTATTGAACTAAGAAGGGGCGAAAGCGCGAAGTTAAATTCTTGCTAT TGTAAATTTAAGAGAGGTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MSSNNFDHKVSAPCIIDNGIIVNKRDMQRLLIDLGRVKYIHTQDGQIQSQGEGYILEVFADHQRSTLIANHSIYLNVFSF DYLELRRSPCQETYFNFFNEGRQLRLIPLSNPLQEENSRNINAAAFDAVMDQVLSSNWDLELDDDCPF
Sequences:
>Translated_148_residues MSSNNFDHKVSAPCIIDNGIIVNKRDMQRLLIDLGRVKYIHTQDGQIQSQGEGYILEVFADHQRSTLIANHSIYLNVFSF DYLELRRSPCQETYFNFFNEGRQLRLIPLSNPLQEENSRNINAAAFDAVMDQVLSSNWDLELDDDCPF >Mature_147_residues SSNNFDHKVSAPCIIDNGIIVNKRDMQRLLIDLGRVKYIHTQDGQIQSQGEGYILEVFADHQRSTLIANHSIYLNVFSFD YLELRRSPCQETYFNFFNEGRQLRLIPLSNPLQEENSRNINAAAFDAVMDQVLSSNWDLELDDDCPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17103; Mature: 16972
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSNNFDHKVSAPCIIDNGIIVNKRDMQRLLIDLGRVKYIHTQDGQIQSQGEGYILEVFA CCCCCCCCCCCCCEEECCCEEECHHHHHHHHHHHHCEEEEECCCCEEEECCCCEEEEEEE DHQRSTLIANHSIYLNVFSFDYLELRRSPCQETYFNFFNEGRQLRLIPLSNPLQEENSRN CCCCCEEEECCEEEEEEEECHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC INAAAFDAVMDQVLSSNWDLELDDDCPF CCHHHHHHHHHHHHHCCCCEEECCCCCC >Mature Secondary Structure SSNNFDHKVSAPCIIDNGIIVNKRDMQRLLIDLGRVKYIHTQDGQIQSQGEGYILEVFA CCCCCCCCCCCCEEECCCEEECHHHHHHHHHHHHCEEEEECCCCEEEECCCCEEEEEEE DHQRSTLIANHSIYLNVFSFDYLELRRSPCQETYFNFFNEGRQLRLIPLSNPLQEENSRN CCCCCEEEECCEEEEEEEECHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC INAAAFDAVMDQVLSSNWDLELDDDCPF CCHHHHHHHHHHHHHCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA