Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113475975
Identifier: 113475975
GI number: 113475975
Start: 3618887
End: 3619681
Strand: Reverse
Name: 113475975
Synonym: Tery_2343
Alternate gene names: NA
Gene position: 3619681-3618887 (Counterclockwise)
Preceding gene: 113475976
Following gene: 113475974
Centisome position: 46.7
GC content: 34.59
Gene sequence:
>795_bases ATGTCAGAAGATCAACCAAAGCAAATAAATTCAGAACAACCTCAAACAGAAGCAATTTCTCAGGAAACGACAGAAAATCC TTCTATGATATCCGAAACCCAACCTCCAGAACAACCCATTTCTGATAATGAATCAGTTGTTGCCAAACCTCGACTTTGGC AGCAAGTTTTGGGGTTAGTTCGTTCCTTATTACCACAGTCTCTAAATAAGAATCTTTCTGATAACTTTTTGAGTGTGGCT GTCACAGGTATTTTTGCCCTTATTCTGGTAGTTATTTTTGTATCAATTTCACCTAGTCAAGATATTCCCGTCGTTGCAGA GTATGAATTAAATGAAGAAACTCCCGCCCCAGAATCTCTAAGTTCTACAATAGATTCAAAAAATCCACAACTTTCGGAAA CAGCATTACAAGAAGCTCTTGAATCTACAGAGCCCATTATCACCCCACCTCCAGAGTTGACTCCAGAGCAAACTTTTCTA GTGTCAATTCAAAATCAGATTGATGATTTAGCTAATCAATATGCTGGTGGAATTATTAAGTCTTTAAAATTTTATCTTTC CACTAATTTATTAATGGCTGAACTGAGCAATGATTGGTATAACATGACTCAAGAAGAACAAAATAAATTAGTCAATCAAA TGTTTGAAGAAGTGCAAGATTTAGACTTTAAGAAATTGATACTAATCAACTCTCAAGGTAGAACTATAGCTCGTACTTCA GTTATTAATTCTTATATGATAATTTTAGAGCGATCGCTTTTAAAATTACCAGAGTCTTTTGATAGTAAAGAATAG
Upstream 100 bases:
>100_bases GTCGCAACAATAGGATAATTGACCAATAAGTTTGAAAGCTGTTAAAACTCTCTCCAACTCATTATTCGTTGATTTACTTA GTCCAAAAGGTATAGAAAAA
Downstream 100 bases:
>100_bases TTAATTCTCAGCATTCATTGTTCAGCTTTTCCTGGATAATCGAATCCCAATCAACTTTTGAACAGAATAAACTAATAAGG TTATCTGATGACCTTTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MSEDQPKQINSEQPQTEAISQETTENPSMISETQPPEQPISDNESVVAKPRLWQQVLGLVRSLLPQSLNKNLSDNFLSVA VTGIFALILVVIFVSISPSQDIPVVAEYELNEETPAPESLSSTIDSKNPQLSETALQEALESTEPIITPPPELTPEQTFL VSIQNQIDDLANQYAGGIIKSLKFYLSTNLLMAELSNDWYNMTQEEQNKLVNQMFEEVQDLDFKKLILINSQGRTIARTS VINSYMIILERSLLKLPESFDSKE
Sequences:
>Translated_264_residues MSEDQPKQINSEQPQTEAISQETTENPSMISETQPPEQPISDNESVVAKPRLWQQVLGLVRSLLPQSLNKNLSDNFLSVA VTGIFALILVVIFVSISPSQDIPVVAEYELNEETPAPESLSSTIDSKNPQLSETALQEALESTEPIITPPPELTPEQTFL VSIQNQIDDLANQYAGGIIKSLKFYLSTNLLMAELSNDWYNMTQEEQNKLVNQMFEEVQDLDFKKLILINSQGRTIARTS VINSYMIILERSLLKLPESFDSKE >Mature_263_residues SEDQPKQINSEQPQTEAISQETTENPSMISETQPPEQPISDNESVVAKPRLWQQVLGLVRSLLPQSLNKNLSDNFLSVAV TGIFALILVVIFVSISPSQDIPVVAEYELNEETPAPESLSSTIDSKNPQLSETALQEALESTEPIITPPPELTPEQTFLV SIQNQIDDLANQYAGGIIKSLKFYLSTNLLMAELSNDWYNMTQEEQNKLVNQMFEEVQDLDFKKLILINSQGRTIARTSV INSYMIILERSLLKLPESFDSKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29571; Mature: 29439
Theoretical pI: Translated: 3.92; Mature: 3.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEDQPKQINSEQPQTEAISQETTENPSMISETQPPEQPISDNESVVAKPRLWQQVLGLV CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHH RSLLPQSLNKNLSDNFLSVAVTGIFALILVVIFVSISPSQDIPVVAEYELNEETPAPESL HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHH SSTIDSKNPQLSETALQEALESTEPIITPPPELTPEQTFLVSIQNQIDDLANQYAGGIIK HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH SLKFYLSTNLLMAELSNDWYNMTQEEQNKLVNQMFEEVQDLDFKKLILINSQGRTIARTS HHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH VINSYMIILERSLLKLPESFDSKE HHHHHHHHHHHHHHHCCHHCCCCC >Mature Secondary Structure SEDQPKQINSEQPQTEAISQETTENPSMISETQPPEQPISDNESVVAKPRLWQQVLGLV CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHH RSLLPQSLNKNLSDNFLSVAVTGIFALILVVIFVSISPSQDIPVVAEYELNEETPAPESL HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHH SSTIDSKNPQLSETALQEALESTEPIITPPPELTPEQTFLVSIQNQIDDLANQYAGGIIK HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH SLKFYLSTNLLMAELSNDWYNMTQEEQNKLVNQMFEEVQDLDFKKLILINSQGRTIARTS HHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH VINSYMIILERSLLKLPESFDSKE HHHHHHHHHHHHHHHCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA