Click here to switch to the map view.

The map label for this gene is smpB

Identifier: 113475974

GI number: 113475974

Start: 3617964

End: 3618434

Strand: Reverse

Name: smpB

Synonym: Tery_2342

Alternate gene names: 113475974

Gene position: 3618434-3617964 (Counterclockwise)

Preceding gene: 113475975

Following gene: 113475970

Centisome position: 46.69

GC content: 34.39

Gene sequence:

>471_bases
ATGGCTAAAAAAAGTGGTGAAGGACAAAAAATAATTAGTGATAATCGCCAGGCAAGGTTTAACTATCATATTATAGAGAC
TTATGAAGCTGGCGTGGCATTACAAGGAACAGAAGTAAAATCAATCCGAGAAGGTAAAGTCAACCTACGGGATGGTTATG
CTTTAATTCGTAATAATGAAGCATGGTTACTTAACGTTCATATTTCCCCATATCAAAAAGCAGGAGATTTTTTTAATCAC
GAACCCCGGCGTAGTAGAAGACTATTGTTACATAAACAAGAAATTCGAAAATTAATTGGAAAAGTAGAACAACAGGGATT
AACTTTAGTACCATTGAGAATGTATTTTAAGCGTGGTTGGGTAAAAGTCGATATTGCTTTAGCACAAGGTAAAAAACTTT
ATGATAAGCGTGAAACTATTAAACGTAGAGATGATAAACGGGCTATGCAAAGAGCAATTAAACAATACTAG

Upstream 100 bases:

>100_bases
AATAGCTGATGGTTTAACCCTTACTTTAATCTATTTTTGTAGCTAATAATTTTATAGTATAATAAAAAATTAAAGTTCAA
AAAATGTTTAAAAATATGTT

Downstream 100 bases:

>100_bases
ATGAACAAATTGTAGAAGAGTAAAATTAATGATTCGGCTATTGAATGATTTTTTAGTAGATTTAATTTATGGGAAAGTAT
ATTCCTCTGTTATACCAAAG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MAKKSGEGQKIISDNRQARFNYHIIETYEAGVALQGTEVKSIREGKVNLRDGYALIRNNEAWLLNVHISPYQKAGDFFNH
EPRRSRRLLLHKQEIRKLIGKVEQQGLTLVPLRMYFKRGWVKVDIALAQGKKLYDKRETIKRRDDKRAMQRAIKQY

Sequences:

>Translated_156_residues
MAKKSGEGQKIISDNRQARFNYHIIETYEAGVALQGTEVKSIREGKVNLRDGYALIRNNEAWLLNVHISPYQKAGDFFNH
EPRRSRRLLLHKQEIRKLIGKVEQQGLTLVPLRMYFKRGWVKVDIALAQGKKLYDKRETIKRRDDKRAMQRAIKQY
>Mature_155_residues
AKKSGEGQKIISDNRQARFNYHIIETYEAGVALQGTEVKSIREGKVNLRDGYALIRNNEAWLLNVHISPYQKAGDFFNHE
PRRSRRLLLHKQEIRKLIGKVEQQGLTLVPLRMYFKRGWVKVDIALAQGKKLYDKRETIKRRDDKRAMQRAIKQY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=158, Percent_Identity=44.3037974683544, Blast_Score=130, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_TRIEI (Q112L2)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_722035.1
- ProteinModelPortal:   Q112L2
- SMR:   Q112L2
- STRING:   Q112L2
- GeneID:   4245224
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_2342
- NMPDR:   fig|203124.1.peg.4618
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q112L2
- ProtClustDB:   PRK05422
- BioCyc:   TERY203124:TERY_2342-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18351; Mature: 18219

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKSGEGQKIISDNRQARFNYHIIETYEAGVALQGTEVKSIREGKVNLRDGYALIRNNE
CCCCCCCCCEECCCCCCEEEEEEEEEEECCCEEEECCCHHHHHCCCCEECCCEEEEECCC
AWLLNVHISPYQKAGDFFNHEPRRSRRLLLHKQEIRKLIGKVEQQGLTLVPLRMYFKRGW
EEEEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCC
VKVDIALAQGKKLYDKRETIKRRDDKRAMQRAIKQY
EEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHCC
>Mature Secondary Structure 
AKKSGEGQKIISDNRQARFNYHIIETYEAGVALQGTEVKSIREGKVNLRDGYALIRNNE
CCCCCCCCEECCCCCCEEEEEEEEEEECCCEEEECCCHHHHHCCCCEECCCEEEEECCC
AWLLNVHISPYQKAGDFFNHEPRRSRRLLLHKQEIRKLIGKVEQQGLTLVPLRMYFKRGW
EEEEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCC
VKVDIALAQGKKLYDKRETIKRRDDKRAMQRAIKQY
EEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA