Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113475938
Identifier: 113475938
GI number: 113475938
Start: 3569291
End: 3569746
Strand: Reverse
Name: 113475938
Synonym: Tery_2302
Alternate gene names: NA
Gene position: 3569746-3569291 (Counterclockwise)
Preceding gene: 113475939
Following gene: 113475937
Centisome position: 46.06
GC content: 34.65
Gene sequence:
>456_bases GTGAAATTTTTCCAGATTAGCGAAAATACTGATAAAAACCAAGTAGATTTAGAAGAAAAAAAGGTTTCTCAGAGGTTACC TTTGGAAGTTAGTTCAGAAAAGGGAGAAGTTTTAATTCCTACTAATTCTCAATCAGAAGAAGAAGAAAGAAAGGTACAAA AAGCAGGGGCATGGGCAGTATTTGCTTCAACGTTTGTGACAATATTCTTAGCAGAAATTGGTGATAAAACTCAACTTACT ACTTTGCTAATGACTGCTGAGTCTCAAGCTCCTTGGATAGTATTTGCAGGTGCAGGTAGTGCCTTAGTAATTACAAGTTT ATTGGGGGTTTTGTTAGGTCAATGGTTAGCTAGTCACCTTTCTCCAAAAACTATAGAAAGGTCGGCAGGAGCTATTTTAT TGCTAATATCTTTGACTTTGATATTTGAAGTTTTTTATGAAAATTTTCATGGTTAA
Upstream 100 bases:
>100_bases TAGTTAAGTAGTTGAGATAGAGGATAATTATTTGAAACAATAAATAAGATTGAAAAAATTTAGATACATTTAGTAATTTA GTAATTTATTATAGTTGCCA
Downstream 100 bases:
>100_bases TAAATTATGTATTATTTCAGTTATCAGGATTAAGAATATGGAATTTCTGATAAGTATTTACAGAAAATTATTGGTCGCAT TAATGTTGAGAAAAGAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MKFFQISENTDKNQVDLEEKKVSQRLPLEVSSEKGEVLIPTNSQSEEEERKVQKAGAWAVFASTFVTIFLAEIGDKTQLT TLLMTAESQAPWIVFAGAGSALVITSLLGVLLGQWLASHLSPKTIERSAGAILLLISLTLIFEVFYENFHG
Sequences:
>Translated_151_residues MKFFQISENTDKNQVDLEEKKVSQRLPLEVSSEKGEVLIPTNSQSEEEERKVQKAGAWAVFASTFVTIFLAEIGDKTQLT TLLMTAESQAPWIVFAGAGSALVITSLLGVLLGQWLASHLSPKTIERSAGAILLLISLTLIFEVFYENFHG >Mature_151_residues MKFFQISENTDKNQVDLEEKKVSQRLPLEVSSEKGEVLIPTNSQSEEEERKVQKAGAWAVFASTFVTIFLAEIGDKTQLT TLLMTAESQAPWIVFAGAGSALVITSLLGVLLGQWLASHLSPKTIERSAGAILLLISLTLIFEVFYENFHG
Specific function: Unknown
COG id: COG2119
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16629; Mature: 16629
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFFQISENTDKNQVDLEEKKVSQRLPLEVSSEKGEVLIPTNSQSEEEERKVQKAGAWAV CCEEECCCCCCCCCCCHHHHHHHHHCCCEECCCCCCEEEECCCCCHHHHHHHHHHCCHHH FASTFVTIFLAEIGDKTQLTTLLMTAESQAPWIVFAGAGSALVITSLLGVLLGQWLASHL HHHHHHHHHHHHCCCCHHHHHHEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHC SPKTIERSAGAILLLISLTLIFEVFYENFHG CHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKFFQISENTDKNQVDLEEKKVSQRLPLEVSSEKGEVLIPTNSQSEEEERKVQKAGAWAV CCEEECCCCCCCCCCCHHHHHHHHHCCCEECCCCCCEEEECCCCCHHHHHHHHHHCCHHH FASTFVTIFLAEIGDKTQLTTLLMTAESQAPWIVFAGAGSALVITSLLGVLLGQWLASHL HHHHHHHHHHHHCCCCHHHHHHEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHC SPKTIERSAGAILLLISLTLIFEVFYENFHG CHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA