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The map label for this gene is ddpX [H]

Identifier: 113475865

GI number: 113475865

Start: 3468868

End: 3469581

Strand: Reverse

Name: ddpX [H]

Synonym: Tery_2224

Alternate gene names: 113475865

Gene position: 3469581-3468868 (Counterclockwise)

Preceding gene: 113475867

Following gene: 113475864

Centisome position: 44.77

GC content: 36.97

Gene sequence:

>714_bases
ATGAAACCTTACCAAAAAATTAAAATTCAAGAATGTAACGAGCCCTTAGTTCCAATTCCCTTAGAATTATTTGCCATAGA
ATCACCTCATCCCTATCAAAAACTAGGTGCTCCCTATCATCTTTCTCAAACAAAATCACCTTATTTTTTACGTCAAAAAG
TATTAGATAGCTTAATAACAGCTCAAACAAAATTACAACAAAATTATCCCAGTTGGCAAATCCAAATATTTGATGCTTAT
CGCCCTATTATCATACAAAAATTTATGGTAGATTATACTTTTACAGAAACAGTAAAAGCTCATGGTTTAACATTAGATAG
TCCGTCTTTAACCGAAGTAAAACGCCAAGAAATTTTAGAGCTAGTTTATCAGTTTTGGGCAACTCCCAATTCAGATCCTA
GGACACCACCACCTCATAGCACTGGTGCTGCTGTAGATGTCACCTTAGTTGATGCCAATGGCAAAATCATTAATATGGGC
TCTCCCATTGATGAATTATCCCCTCGCTCCTATCCCAAACATTTTTTAGAGCTCCAGAATGAAGAAGCTCAAAAATATCA
TCAACATCGACAATTATTAGCAGAAGTCATGATATTTGGGGGGTTTCAACAGCATCCACAGGAATGGTGGCATTTTTCCC
TAGGCGACCAAATGTGGGCTTGGTTAACTAATGATCAAGGTAAAGTTGTGGCCAGATATGGAAGAGTAGAGTAG

Upstream 100 bases:

>100_bases
ATTCAAAATATATTTATATATATTTAAAATATCCGTAAATTATGAATCAATAACTAACAAATAATAACTCATAAATAATA
CTTAATAACTCATAACTAAC

Downstream 100 bases:

>100_bases
TAGTTTTTTATAATGGTGCGTCAGTCCTAGTCTTTTCCACTGGTTTTATATTCAAAAAATTTGTATAGATAGAATGATGA
TCTAGGCGATCGCTACCTAT

Product: peptidase M15D, vanX D-ala-D-ala dipeptidase

Products: NA

Alternate protein names: D-Ala-D-Ala dipeptidase [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKPYQKIKIQECNEPLVPIPLELFAIESPHPYQKLGAPYHLSQTKSPYFLRQKVLDSLITAQTKLQQNYPSWQIQIFDAY
RPIIIQKFMVDYTFTETVKAHGLTLDSPSLTEVKRQEILELVYQFWATPNSDPRTPPPHSTGAAVDVTLVDANGKIINMG
SPIDELSPRSYPKHFLELQNEEAQKYHQHRQLLAEVMIFGGFQQHPQEWWHFSLGDQMWAWLTNDQGKVVARYGRVE

Sequences:

>Translated_237_residues
MKPYQKIKIQECNEPLVPIPLELFAIESPHPYQKLGAPYHLSQTKSPYFLRQKVLDSLITAQTKLQQNYPSWQIQIFDAY
RPIIIQKFMVDYTFTETVKAHGLTLDSPSLTEVKRQEILELVYQFWATPNSDPRTPPPHSTGAAVDVTLVDANGKIINMG
SPIDELSPRSYPKHFLELQNEEAQKYHQHRQLLAEVMIFGGFQQHPQEWWHFSLGDQMWAWLTNDQGKVVARYGRVE
>Mature_237_residues
MKPYQKIKIQECNEPLVPIPLELFAIESPHPYQKLGAPYHLSQTKSPYFLRQKVLDSLITAQTKLQQNYPSWQIQIFDAY
RPIIIQKFMVDYTFTETVKAHGLTLDSPSLTEVKRQEILELVYQFWATPNSDPRTPPPHSTGAAVDVTLVDANGKIINMG
SPIDELSPRSYPKHFLELQNEEAQKYHQHRQLLAEVMIFGGFQQHPQEWWHFSLGDQMWAWLTNDQGKVVARYGRVE

Specific function: Hydrolyzes D-Ala-D-Ala. May have a role in cell-wall turnover [H]

COG id: COG2173

COG function: function code M; D-alanyl-D-alanine dipeptidase

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR000755 [H]

Pfam domain/function: PF01427 Peptidase_M15 [H]

EC number: =3.4.13.22 [H]

Molecular weight: Translated: 27504; Mature: 27504

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYQKIKIQECNEPLVPIPLELFAIESPHPYQKLGAPYHLSQTKSPYFLRQKVLDSLIT
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCEECCCCCCHHHHHHHHHHHHHH
AQTKLQQNYPSWQIQIFDAYRPIIIQKFMVDYTFTETVKAHGLTLDSPSLTEVKRQEILE
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHH
LVYQFWATPNSDPRTPPPHSTGAAVDVTLVDANGKIINMGSPIDELSPRSYPKHFLELQN
HHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEECCCCHHHCCCCCCCHHHHHHCC
EEAQKYHQHRQLLAEVMIFGGFQQHPQEWWHFSLGDQMWAWLTNDQGKVVARYGRVE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCCCCEEEEEECCCCCEEECCCCCC
>Mature Secondary Structure
MKPYQKIKIQECNEPLVPIPLELFAIESPHPYQKLGAPYHLSQTKSPYFLRQKVLDSLIT
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCEECCCCCCHHHHHHHHHHHHHH
AQTKLQQNYPSWQIQIFDAYRPIIIQKFMVDYTFTETVKAHGLTLDSPSLTEVKRQEILE
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHH
LVYQFWATPNSDPRTPPPHSTGAAVDVTLVDANGKIINMGSPIDELSPRSYPKHFLELQN
HHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEECCCCHHHCCCCCCCHHHHHHCC
EEAQKYHQHRQLLAEVMIFGGFQQHPQEWWHFSLGDQMWAWLTNDQGKVVARYGRVE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCCCCEEEEEECCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9751644 [H]