Click here to switch to the map view.

The map label for this gene is atpH

Identifier: 113475841

GI number: 113475841

Start: 3431712

End: 3432260

Strand: Reverse

Name: atpH

Synonym: Tery_2200

Alternate gene names: 113475841

Gene position: 3432260-3431712 (Counterclockwise)

Preceding gene: 113475842

Following gene: 113475840

Centisome position: 44.29

GC content: 38.8

Gene sequence:

>549_bases
ATGAGTGTAATAGCTGGTGAAATTGTAGAACCTTATGCAGCAGCTCTGATGTCCTTGGCTCAATCAAAAGACTTGACTGA
TAAATTTGCCGAAGATGTGCGGAGCCTGATTAATATTCTGGATGAATCCCCGGAATTTAAGCAATTTGTGGGAAATCCAG
TTATTAAGCAAGAGGATAAAAAAGCAGTGGTAAAACGCATGCTGGGAGAACAGGTTGATCCCTTAATGCGTAATTTCTTA
ATGCTACTAATTGATAAAGGTCGGATTACTTTTCTAGAACAGATAGGGAAACAATACTTAGCACTATTGCGTGAACTCAA
TCAAACTGTTTTAGCAGAAGTGACCTCCACAGTAGAATTGAATGAAAACCAAAAAAATACAATCCGTGAACGAGTCAAAT
CAATGACTAGTGCAAGGGAAGTGGAAATAGAAACTAAAGTCGACCCAAGTATATTGGGTGGTGTCATTATCAAAATAGGT
TCTCAGATAATTGACTCTAGTCTGCAAGGACAACTGCGTCGTATTGGCATCAGCCTCAAAACACTATAG

Upstream 100 bases:

>100_bases
AAGCATTGGCAAAAGTAGAATCTCAATTGCAAGAAACTTTAGATGAGAATGCCCAGCAACAATTAATAGATAGTAGCATA
GGGCGATTAGGAGGTCAATT

Downstream 100 bases:

>100_bases
CAGAAGTAAAAAGTCCGCCCTCTTTACCCCTAATTAAGGTAAATTTAGTAGGTGGGAATGGCAATTATCCATTAAGTTAT
TGCTGTGACTATATTTCAGA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSVIAGEIVEPYAAALMSLAQSKDLTDKFAEDVRSLINILDESPEFKQFVGNPVIKQEDKKAVVKRMLGEQVDPLMRNFL
MLLIDKGRITFLEQIGKQYLALLRELNQTVLAEVTSTVELNENQKNTIRERVKSMTSAREVEIETKVDPSILGGVIIKIG
SQIIDSSLQGQLRRIGISLKTL

Sequences:

>Translated_182_residues
MSVIAGEIVEPYAAALMSLAQSKDLTDKFAEDVRSLINILDESPEFKQFVGNPVIKQEDKKAVVKRMLGEQVDPLMRNFL
MLLIDKGRITFLEQIGKQYLALLRELNQTVLAEVTSTVELNENQKNTIRERVKSMTSAREVEIETKVDPSILGGVIIKIG
SQIIDSSLQGQLRRIGISLKTL
>Mature_181_residues
SVIAGEIVEPYAAALMSLAQSKDLTDKFAEDVRSLINILDESPEFKQFVGNPVIKQEDKKAVVKRMLGEQVDPLMRNFLM
LLIDKGRITFLEQIGKQYLALLRELNQTVLAEVTSTVELNENQKNTIRERVKSMTSAREVEIETKVDPSILGGVIIKIGS
QIIDSSLQGQLRRIGISLKTL

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Homo sapiens, GI4502303, Length=171, Percent_Identity=28.6549707602339, Blast_Score=71, Evalue=4e-13,
Organism=Escherichia coli, GI1790173, Length=174, Percent_Identity=23.5632183908046, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71984717, Length=174, Percent_Identity=26.4367816091954, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71984710, Length=174, Percent_Identity=26.4367816091954, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24647054, Length=168, Percent_Identity=27.9761904761905, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_TRIEI (Q112Z5)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721902.1
- ProteinModelPortal:   Q112Z5
- SMR:   Q112Z5
- STRING:   Q112Z5
- GeneID:   4243233
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_2200
- NMPDR:   fig|203124.1.peg.1395
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   NANKDFV
- PhylomeDB:   Q112Z5
- ProtClustDB:   PRK05758
- BioCyc:   TERY203124:TERY_2200-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20356; Mature: 20225

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIAGEIVEPYAAALMSLAQSKDLTDKFAEDVRSLINILDESPEFKQFVGNPVIKQEDK
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHH
KAVVKRMLGEQVDPLMRNFLMLLIDKGRITFLEQIGKQYLALLRELNQTVLAEVTSTVEL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NENQKNTIRERVKSMTSAREVEIETKVDPSILGGVIIKIGSQIIDSSLQGQLRRIGISLK
CCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC
TL
CC
>Mature Secondary Structure 
SVIAGEIVEPYAAALMSLAQSKDLTDKFAEDVRSLINILDESPEFKQFVGNPVIKQEDK
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHH
KAVVKRMLGEQVDPLMRNFLMLLIDKGRITFLEQIGKQYLALLRELNQTVLAEVTSTVEL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NENQKNTIRERVKSMTSAREVEIETKVDPSILGGVIIKIGSQIIDSSLQGQLRRIGISLK
CCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC
TL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA