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The map label for this gene is ylbH [H]

Identifier: 113475788

GI number: 113475788

Start: 3345601

End: 3346149

Strand: Reverse

Name: ylbH [H]

Synonym: Tery_2142

Alternate gene names: 113475788

Gene position: 3346149-3345601 (Counterclockwise)

Preceding gene: 113475789

Following gene: 113475786

Centisome position: 43.18

GC content: 39.34

Gene sequence:

>549_bases
ATGAATTTAAGAATATATGGTAACCGTCAGTTAAAAACTTTACCAGGAATGGAAATTCGACCAACTTTGGCTAAGGTGCG
AGAAGCAGTCTTTAATATCTGGCAAAATAATATAGATGGATGTCGATGGCTCGATATATGTGCTGGTGTAGGTTCTATGG
GAGCAGAAGCTTTATGTAGAGGAGCATCCATAGCGATCGCTATGGAACAATATAGCCCTGCTTGTACTTTAATTCGCCAA
AATTGGCAACTGGTGGCTAGTTCATCCCAGGAATTTCAGGTTTTGCGGGGAGATGTTTTAAAACGGTTAAAAGTTTTAGT
GGGCCAGAAGTTTGATTTGATTTATTTTGATCCCCCCTATACTAGTAATTTATATCAACCAGTATTGGAGGCGATCGCTC
AATATCAACTTCTAGGGCTAACCAGCGAGCTAGCAGTAGAACATTGTCCCAAAATATGGCCAGTTAAATCTATTCCCAAT
TTAGAAATTTGTCGGCAGAAAGTCTATGGCAATACAGCTTTGACTTTCTTTCGTCTTTTTCAGAACTGA

Upstream 100 bases:

>100_bases
TTTAATTTAATTTTTAATTTAATTTTTAATTTGATATCCTGGTACTTCTTTTTTTTTTAAGATAAGTCTTTGAGATGAAT
TTTTGAGGTGAATTTTTGAT

Downstream 100 bases:

>100_bases
GCATAGATAAATTTATGGAAAAACTTAACTTTCTTTCCATCTCTACGTCTTGAATATGTATACTATCACTGAGGGATAAA
AGTGATGGTTTTTACATGTA

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNLRIYGNRQLKTLPGMEIRPTLAKVREAVFNIWQNNIDGCRWLDICAGVGSMGAEALCRGASIAIAMEQYSPACTLIRQ
NWQLVASSSQEFQVLRGDVLKRLKVLVGQKFDLIYFDPPYTSNLYQPVLEAIAQYQLLGLTSELAVEHCPKIWPVKSIPN
LEICRQKVYGNTALTFFRLFQN

Sequences:

>Translated_182_residues
MNLRIYGNRQLKTLPGMEIRPTLAKVREAVFNIWQNNIDGCRWLDICAGVGSMGAEALCRGASIAIAMEQYSPACTLIRQ
NWQLVASSSQEFQVLRGDVLKRLKVLVGQKFDLIYFDPPYTSNLYQPVLEAIAQYQLLGLTSELAVEHCPKIWPVKSIPN
LEICRQKVYGNTALTFFRLFQN
>Mature_182_residues
MNLRIYGNRQLKTLPGMEIRPTLAKVREAVFNIWQNNIDGCRWLDICAGVGSMGAEALCRGASIAIAMEQYSPACTLIRQ
NWQLVASSSQEFQVLRGDVLKRLKVLVGQKFDLIYFDPPYTSNLYQPVLEAIAQYQLLGLTSELAVEHCPKIWPVKSIPN
LEICRQKVYGNTALTFFRLFQN

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20642; Mature: 20642

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRIYGNRQLKTLPGMEIRPTLAKVREAVFNIWQNNIDGCRWLDICAGVGSMGAEALCR
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHC
GASIAIAMEQYSPACTLIRQNWQLVASSSQEFQVLRGDVLKRLKVLVGQKFDLIYFDPPY
CCCEEEEECCCCCHHHHHHHCHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
TSNLYQPVLEAIAQYQLLGLTSELAVEHCPKIWPVKSIPNLEICRQKVYGNTALTFFRLF
CCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
QN
CC
>Mature Secondary Structure
MNLRIYGNRQLKTLPGMEIRPTLAKVREAVFNIWQNNIDGCRWLDICAGVGSMGAEALCR
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHC
GASIAIAMEQYSPACTLIRQNWQLVASSSQEFQVLRGDVLKRLKVLVGQKFDLIYFDPPY
CCCEEEEECCCCCHHHHHHHCHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
TSNLYQPVLEAIAQYQLLGLTSELAVEHCPKIWPVKSIPNLEICRQKVYGNTALTFFRLF
CCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
QN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]