| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475768
Identifier: 113475768
GI number: 113475768
Start: 3314390
End: 3315124
Strand: Reverse
Name: 113475768
Synonym: Tery_2121
Alternate gene names: NA
Gene position: 3315124-3314390 (Counterclockwise)
Preceding gene: 113475772
Following gene: 113475767
Centisome position: 42.78
GC content: 40.68
Gene sequence:
>735_bases ATGGCTAATACCAGTAATTTCCGTCAAGCAATGCGTGATGCCAAAGGCCAATCGTTAGTTGGCCCTAATGTCATTGTTAA TGCTTTACCTTTTGTAGGCGGTGGCCTCGTTCTTACAGCAGTAGGTATATTTGGTGGCCTAGGAGTCTTAAAATCTAACC CTGGTCTATTTCAAACTACCTTCTGGATAGCATTGGTAGCAGAATTAGCCCTATTTTTTGTTGCCCGTACAATTGCGGAA AAGGGTAATAATAATGTGGCTCTACCTTTATTAGCTACTTATAGCTTGCTATCAGGATATACCCTGGCTGGTTTAGTATA TATAGCTTTAAATACGCAAGGAGTAGGTCTTGGGGGACTAGGTTTTGCAGCTGGTGGTTGTGGTGTCACCTTTATTGCAG CTCGTCAAATAGGATCAAATTTGTCTGAAGAAGATGGAATGGCTTTAACAAGAACTGTGAGCCTAGGAATAACTGCATTA TTGGTGGCGGTTATCGGCCAAGTTATTTTGAGATTTTTTGGTGTCTATACTGCAGGGTGGTTAGAAATTGCCATTTCTGG TATTGGTGTATTTTTATTTGCTGGTGCTGCAGTAGTAGATTTCTATATTATGCCCCGTACTTATCGCGACGATCAGTATG TTCTCGCAGCTCTCTCAATGTACTTAACTTATATCAACCTATTCATATTTATTCTACGACTTCTAATTGCAATTAGTGGT GGTAGTCGCGACTAG
Upstream 100 bases:
>100_bases CAACTTCACATAATAGTGGATTTGGTATATGCACAAAATCAACTCCAGTGTCACAATATTATAAATAGAAATTCTTTTTG ATTAACTAAGAGAAAAAATT
Downstream 100 bases:
>100_bases GTTGTTAATAGCAGTGAGCAGTTGATGAAATAACTCTACTGCTGCTGTAGGGGTTTCGCTACTAAACCCCTACCTCTGGG CATTTTATCTAAAATTTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MANTSNFRQAMRDAKGQSLVGPNVIVNALPFVGGGLVLTAVGIFGGLGVLKSNPGLFQTTFWIALVAELALFFVARTIAE KGNNNVALPLLATYSLLSGYTLAGLVYIALNTQGVGLGGLGFAAGGCGVTFIAARQIGSNLSEEDGMALTRTVSLGITAL LVAVIGQVILRFFGVYTAGWLEIAISGIGVFLFAGAAVVDFYIMPRTYRDDQYVLAALSMYLTYINLFIFILRLLIAISG GSRD
Sequences:
>Translated_244_residues MANTSNFRQAMRDAKGQSLVGPNVIVNALPFVGGGLVLTAVGIFGGLGVLKSNPGLFQTTFWIALVAELALFFVARTIAE KGNNNVALPLLATYSLLSGYTLAGLVYIALNTQGVGLGGLGFAAGGCGVTFIAARQIGSNLSEEDGMALTRTVSLGITAL LVAVIGQVILRFFGVYTAGWLEIAISGIGVFLFAGAAVVDFYIMPRTYRDDQYVLAALSMYLTYINLFIFILRLLIAISG GSRD >Mature_243_residues ANTSNFRQAMRDAKGQSLVGPNVIVNALPFVGGGLVLTAVGIFGGLGVLKSNPGLFQTTFWIALVAELALFFVARTIAEK GNNNVALPLLATYSLLSGYTLAGLVYIALNTQGVGLGGLGFAAGGCGVTFIAARQIGSNLSEEDGMALTRTVSLGITALL VAVIGQVILRFFGVYTAGWLEIAISGIGVFLFAGAAVVDFYIMPRTYRDDQYVLAALSMYLTYINLFIFILRLLIAISGG SRD
Specific function: Unknown
COG id: COG0670
COG function: function code R; Integral membrane protein, interacts with FtsH
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25633; Mature: 25502
Theoretical pI: Translated: 8.92; Mature: 8.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTSNFRQAMRDAKGQSLVGPNVIVNALPFVGGGLVLTAVGIFGGLGVLKSNPGLFQTT CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH FWIALVAELALFFVARTIAEKGNNNVALPLLATYSLLSGYTLAGLVYIALNTQGVGLGGL HHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCHHHHHEEEEEEECCCCCCCCH GFAAGGCGVTFIAARQIGSNLSEEDGMALTRTVSLGITALLVAVIGQVILRFFGVYTAGW HHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEIAISGIGVFLFAGAAVVDFYIMPRTYRDDQYVLAALSMYLTYINLFIFILRLLIAISG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GSRD CCCC >Mature Secondary Structure ANTSNFRQAMRDAKGQSLVGPNVIVNALPFVGGGLVLTAVGIFGGLGVLKSNPGLFQTT CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH FWIALVAELALFFVARTIAEKGNNNVALPLLATYSLLSGYTLAGLVYIALNTQGVGLGGL HHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCHHHHHEEEEEEECCCCCCCCH GFAAGGCGVTFIAARQIGSNLSEEDGMALTRTVSLGITALLVAVIGQVILRFFGVYTAGW HHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEIAISGIGVFLFAGAAVVDFYIMPRTYRDDQYVLAALSMYLTYINLFIFILRLLIAISG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GSRD CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA