| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475728
Identifier: 113475728
GI number: 113475728
Start: 3239753
End: 3241135
Strand: Reverse
Name: 113475728
Synonym: Tery_2075
Alternate gene names: NA
Gene position: 3241135-3239753 (Counterclockwise)
Preceding gene: 113475729
Following gene: 113475727
Centisome position: 41.82
GC content: 30.59
Gene sequence:
>1383_bases ATGAAATATGATCTTAAACTTATTCGGAATTTAATTAACAAAGCTCTAGGACCAGACGAATTTGAAGATTTAGTTTTTTA TAGCTTTCATGATGTTTATAGCCAATTTATAAATGGACAAAGTAAAAATCAAAGATTCCGAATTTTATTTGATTATATTG ATAAACACGAAAAAATAGATGATTTACTAAATGAAATTCAAGAAATCAATCCTAAGGCTTTTAATGAGTTTGAGACTGAC AGACAAGAACAGACAAACTTATCGGGTTCTAGGAATAAAGAAGATAAAGCAATTAATGATTTGGGAGAGTATTTACAGAA TCAATCTTTTGAAAAATTAGAAAAAATATACTTATCATGTCGCCCTGAAATGGCAGATAAAACAGTTAAGAATATTGATG ATATTTTGACTCAACTAAATCGTATTATTCCCCTAAAAAAATATCGGCTTATTATTCCATTTGTAGTAGGAATTCAACAA CAAGTTTCTGATTCAAATCTACAAAAAACCCTAGATAAATGGCTAGAAGAATACGGTAATTTTTTTGGATATTCTGAGTT TAAGGAAACAGCAACACCAAATTTTAGAAAATCTTCACCTGATACCCAAAATCCCAAGTTACTAGAATCTTATTTGTTGA TTGAGCTTAAGAAAAAGAATTATAGTTCTTTACAAATACAAAGTTGGTTTTGGTCTAGTCAATTAATCCGTAATATTCAA GAAAAAGACTTGATTGAACGGGAATATCTATCTAAAAAATTAACAGAACTGATAGACGAATCCAATAAGAGAATGAAAAA AATTGGCAGTAAAGACTTGAGGATAGAGTTATTTTTAGATACTAATTTGCTTATAGAAAGTAACTCTTATTTTGATTGGC TGGAGGTAACAAAGCTCAACCGTCCTGCAAAAATGTGTAAGCAATATATTGTTACTTTTCGTTTAGCTGAAAGGTTAAAA TATACAGCTCAAGATTTAGGGGGAGCTTGGCAAAGAAAATGGGAAAATTTAAACTCTAATCAAGGTAATGTGGTAGATTT TTATCACACAGATGATTATGAATTAGGGCTAAATAAAACCGTAGGAATTAAACTAAATAAACTTTCTGAACTAACTAAGT TTTTTGACCTAATTGTACTCAACTCTCTGCCTCTTGCTATTTGGTCAAGGCGTGATTTACAAACCATTTCTTGCCAAAAT GAAATTAATCGAATACTCAGGAATGTTCAAGGTAATTTTAATCAGTTACCAAAGGAAGTAACAGATGAGAGAAAAAAGGC AAAAGGAGAAGAACATATTGGAAAGCATATTTGCCTCTTATGGGATAACCCTGAGAGAATGCCACCGGAACCTAGTGAGC CTAAATATGCTTTAAGTTCTTAA
Upstream 100 bases:
>100_bases TTATTGGATTATGCGGCAGTAAGATATTTTAGTTATTAGTTATCATTTTGTTTGGTGATTAATTAGTCTATTACATTGTT TTTTTATTTGTTTGTTTATA
Downstream 100 bases:
>100_bases ATTCTATATGAGAAAATAAAAGTATTTTTCTCATATCTTTAAACTTGTATAAATTTATTAAATTATTAACTATAAATTAA TTAATTATGACTGAAAATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MKYDLKLIRNLINKALGPDEFEDLVFYSFHDVYSQFINGQSKNQRFRILFDYIDKHEKIDDLLNEIQEINPKAFNEFETD RQEQTNLSGSRNKEDKAINDLGEYLQNQSFEKLEKIYLSCRPEMADKTVKNIDDILTQLNRIIPLKKYRLIIPFVVGIQQ QVSDSNLQKTLDKWLEEYGNFFGYSEFKETATPNFRKSSPDTQNPKLLESYLLIELKKKNYSSLQIQSWFWSSQLIRNIQ EKDLIEREYLSKKLTELIDESNKRMKKIGSKDLRIELFLDTNLLIESNSYFDWLEVTKLNRPAKMCKQYIVTFRLAERLK YTAQDLGGAWQRKWENLNSNQGNVVDFYHTDDYELGLNKTVGIKLNKLSELTKFFDLIVLNSLPLAIWSRRDLQTISCQN EINRILRNVQGNFNQLPKEVTDERKKAKGEEHIGKHICLLWDNPERMPPEPSEPKYALSS
Sequences:
>Translated_460_residues MKYDLKLIRNLINKALGPDEFEDLVFYSFHDVYSQFINGQSKNQRFRILFDYIDKHEKIDDLLNEIQEINPKAFNEFETD RQEQTNLSGSRNKEDKAINDLGEYLQNQSFEKLEKIYLSCRPEMADKTVKNIDDILTQLNRIIPLKKYRLIIPFVVGIQQ QVSDSNLQKTLDKWLEEYGNFFGYSEFKETATPNFRKSSPDTQNPKLLESYLLIELKKKNYSSLQIQSWFWSSQLIRNIQ EKDLIEREYLSKKLTELIDESNKRMKKIGSKDLRIELFLDTNLLIESNSYFDWLEVTKLNRPAKMCKQYIVTFRLAERLK YTAQDLGGAWQRKWENLNSNQGNVVDFYHTDDYELGLNKTVGIKLNKLSELTKFFDLIVLNSLPLAIWSRRDLQTISCQN EINRILRNVQGNFNQLPKEVTDERKKAKGEEHIGKHICLLWDNPERMPPEPSEPKYALSS >Mature_460_residues MKYDLKLIRNLINKALGPDEFEDLVFYSFHDVYSQFINGQSKNQRFRILFDYIDKHEKIDDLLNEIQEINPKAFNEFETD RQEQTNLSGSRNKEDKAINDLGEYLQNQSFEKLEKIYLSCRPEMADKTVKNIDDILTQLNRIIPLKKYRLIIPFVVGIQQ QVSDSNLQKTLDKWLEEYGNFFGYSEFKETATPNFRKSSPDTQNPKLLESYLLIELKKKNYSSLQIQSWFWSSQLIRNIQ EKDLIEREYLSKKLTELIDESNKRMKKIGSKDLRIELFLDTNLLIESNSYFDWLEVTKLNRPAKMCKQYIVTFRLAERLK YTAQDLGGAWQRKWENLNSNQGNVVDFYHTDDYELGLNKTVGIKLNKLSELTKFFDLIVLNSLPLAIWSRRDLQTISCQN EINRILRNVQGNFNQLPKEVTDERKKAKGEEHIGKHICLLWDNPERMPPEPSEPKYALSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54363; Mature: 54363
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYDLKLIRNLINKALGPDEFEDLVFYSFHDVYSQFINGQSKNQRFRILFDYIDKHEKID CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH DLLNEIQEINPKAFNEFETDRQEQTNLSGSRNKEDKAINDLGEYLQNQSFEKLEKIYLSC HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC RPEMADKTVKNIDDILTQLNRIIPLKKYRLIIPFVVGIQQQVSDSNLQKTLDKWLEEYGN CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC FFGYSEFKETATPNFRKSSPDTQNPKLLESYLLIELKKKNYSSLQIQSWFWSSQLIRNIQ CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHH EKDLIEREYLSKKLTELIDESNKRMKKIGSKDLRIELFLDTNLLIESNSYFDWLEVTKLN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCHHHHHHCC RPAKMCKQYIVTFRLAERLKYTAQDLGGAWQRKWENLNSNQGNVVDFYHTDDYELGLNKT CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCE VGIKLNKLSELTKFFDLIVLNSLPLAIWSRRDLQTISCQNEINRILRNVQGNFNQLPKEV ECEEHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHH TDERKKAKGEEHIGKHICLLWDNPERMPPEPSEPKYALSS HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKYDLKLIRNLINKALGPDEFEDLVFYSFHDVYSQFINGQSKNQRFRILFDYIDKHEKID CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH DLLNEIQEINPKAFNEFETDRQEQTNLSGSRNKEDKAINDLGEYLQNQSFEKLEKIYLSC HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC RPEMADKTVKNIDDILTQLNRIIPLKKYRLIIPFVVGIQQQVSDSNLQKTLDKWLEEYGN CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC FFGYSEFKETATPNFRKSSPDTQNPKLLESYLLIELKKKNYSSLQIQSWFWSSQLIRNIQ CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHH EKDLIEREYLSKKLTELIDESNKRMKKIGSKDLRIELFLDTNLLIESNSYFDWLEVTKLN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCHHHHHHCC RPAKMCKQYIVTFRLAERLKYTAQDLGGAWQRKWENLNSNQGNVVDFYHTDDYELGLNKT CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCE VGIKLNKLSELTKFFDLIVLNSLPLAIWSRRDLQTISCQNEINRILRNVQGNFNQLPKEV ECEEHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHH TDERKKAKGEEHIGKHICLLWDNPERMPPEPSEPKYALSS HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA