Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475687

Identifier: 113475687

GI number: 113475687

Start: 3156705

End: 3157208

Strand: Reverse

Name: 113475687

Synonym: Tery_2030

Alternate gene names: NA

Gene position: 3157208-3156705 (Counterclockwise)

Preceding gene: 113475690

Following gene: 113475684

Centisome position: 40.74

GC content: 33.93

Gene sequence:

>504_bases
ATGTCAGGAGTAGTAAAAATTGAGATAAATGAATCGGTAGAAACTCTCAAAAAACTTTTAAAAAGTGCGAGTACAGCTCA
AGAAAAGGAAAGACTTCAAACTATTTACTGGTTGAAAACTCAAACAGTAGAAACAGTAAAAGAAATTGCGATAATGTTAG
GACGCAATCGAGTCACAGTACAAAAATGGTTAGGGAAATATCGTACAGGTGGACTGAATCTTTTACTAGAACCAAAGAAA
AATCTAGGAGGGAGGCCAAGTTCAATTCCACCAAATGTAATCGAGAAATTAGAAGCAGAATTGCAAAACCCGGAAGGTTT
CCAAAGCTATGGTGAAATTCAACAGTGGTTAACGACTTGTTTTGACATCGAGCTGTCTTATCGAACAGTTCATCAATTAG
TCAGATATAAATTAAAAAGTAAATTAAAAGTTCCACGTCCAAATCACATAAAACAAAATAAAGAAGCTCAAGAAAACTTT
AAAAAAAACTCTCATCTCAACTAG

Upstream 100 bases:

>100_bases
CGTTTGTGAGGTAAAGTAAAAATAATGATTAAATAGGTAATACTAATTTCATAAACTTAAGCTACACTTTTAGAAGTAAC
CTATTATAGAAAATGTCCCC

Downstream 100 bases:

>100_bases
AAGAGAAAATTAAGTTAATTAATAAATATTCGGAAAATCAACTGCCAATTCGCTATTGGTGTCAAGACGAGACTAGAATT
GGATTAAAAACTATAACAGG

Product: putative transposase

Products: NA

Alternate protein names: Transposase OrfA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTVQKWLGKYRTGGLNLLLEPKK
NLGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTCFDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENF
KKNSHLN

Sequences:

>Translated_167_residues
MSGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTVQKWLGKYRTGGLNLLLEPKK
NLGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTCFDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENF
KKNSHLN
>Mature_166_residues
SGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTVQKWLGKYRTGGLNLLLEPKKN
LGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTCFDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENFK
KNSHLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19287; Mature: 19155

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTV
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QKWLGKYRTGGLNLLLEPKKNLGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTC
HHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENFKKNSHLN
HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGVVKIEINESVETLKKLLKSASTAQEKERLQTIYWLKTQTVETVKEIAIMLGRNRVTV
CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QKWLGKYRTGGLNLLLEPKKNLGGRPSSIPPNVIEKLEAELQNPEGFQSYGEIQQWLTTC
HHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FDIELSYRTVHQLVRYKLKSKLKVPRPNHIKQNKEAQENFKKNSHLN
HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA