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The map label for this gene is rbcR [H]

Identifier: 113475669

GI number: 113475669

Start: 3130221

End: 3131225

Strand: Reverse

Name: rbcR [H]

Synonym: Tery_2009

Alternate gene names: 113475669

Gene position: 3131225-3130221 (Counterclockwise)

Preceding gene: 113475672

Following gene: 113475666

Centisome position: 40.4

GC content: 37.81

Gene sequence:

>1005_bases
ATGTCTGAGCTTCCTTTCACCCTAGACCAATTACGCATTCTTAAAGCGATCGCTGCTGAAGGTAGCTTTAAACGAGCTGC
CGATAGTCTATTTGTTTCTCAACCAGCAGTTAGTTTACAAGTGCAAAACTTAGAACGACAGTTGAACGTGCCTTTATTTG
ACCGAGGTGGTCGCCGGGCACAATTAACTGAGGCTGGTCATCTATTACTTACTTACGGTGAGAAAATATTGTCTCTTTGT
CAAGAAACTTGCCGGGCGATCGAGGATCTGCAAAATCTCCAGGGAGGTACATTAATTGTTGGTGCTTCTCAAACTACTGG
TACTTATTTACTACCCCGAATGATTGGAATGTTTAGACAAAAATATCCTGATGTAGCTGTGCAGCTACACGTTCATTCTA
CTCGTCGTACTGCTTGGAGTGTAGTTAATGGGCAAATAGATTTAGCTATTATTGGGGGCGAAGTTCCTCCAGAATTGCAA
GAGTCTTTAGAGGTTATACCTTATGCTGAGGATGAACTGGCCTTAATTTTGCCTGTGTCTCACTCTTTGGCAGAAAAGGA
GACAATTCAAAAAGATGATTTGTATCATTTAAAATTCATTACTTTAGATTCTCAATCTACTATTCGCAAAGTAATTGATC
AAGTATTATCCCAGAGTAACATTGATACTCGCCGTCTAAGAGTGGAGATGGAACTAAGTTCAATTGAAGCAATTAAAAAT
GCGGTTCAGTCTGGTTTGGGAGTAGCTTTTGTTTCTGTTTCTGCTATTGAAAAGGAATTACAAATTGGGGTTATGACTAC
AGTAAAAGTAGACCAGATAGTTATCAATAGGATATTATCAGTAATTTATAATCCTAATCGTTACCGCTCTAAAGCAGCAG
AGGCTTTTAGTAAGGAAATTTTGCCTTTGTTTTCTACTTTGAATTTTAACCCTGATAATATTAAGCCTTTATCTAAAGAA
ATACAACCTATAGAGGTAGTAACAAATAATGTTAGTCAAACTTGA

Upstream 100 bases:

>100_bases
TACGACCTATGGAGTCAAATAAAAGGCAAAATGGTCATACTCTGTCCATCAGGTAACCCTTTGGACATCAACTCCCTAAA
TTTCTTTTTCCTTTAACAAT

Downstream 100 bases:

>100_bases
ATAACTTTTGAATACCAGTAACAATTACTGTTTTATGTATTTATTTACTATTCTTATAACTTGAACTATTTTTTTAACCT
TGATGATTTTGTTAAACGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSELPFTLDQLRILKAIAAEGSFKRAADSLFVSQPAVSLQVQNLERQLNVPLFDRGGRRAQLTEAGHLLLTYGEKILSLC
QETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQKYPDVAVQLHVHSTRRTAWSVVNGQIDLAIIGGEVPPELQ
ESLEVIPYAEDELALILPVSHSLAEKETIQKDDLYHLKFITLDSQSTIRKVIDQVLSQSNIDTRRLRVEMELSSIEAIKN
AVQSGLGVAFVSVSAIEKELQIGVMTTVKVDQIVINRILSVIYNPNRYRSKAAEAFSKEILPLFSTLNFNPDNIKPLSKE
IQPIEVVTNNVSQT

Sequences:

>Translated_334_residues
MSELPFTLDQLRILKAIAAEGSFKRAADSLFVSQPAVSLQVQNLERQLNVPLFDRGGRRAQLTEAGHLLLTYGEKILSLC
QETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQKYPDVAVQLHVHSTRRTAWSVVNGQIDLAIIGGEVPPELQ
ESLEVIPYAEDELALILPVSHSLAEKETIQKDDLYHLKFITLDSQSTIRKVIDQVLSQSNIDTRRLRVEMELSSIEAIKN
AVQSGLGVAFVSVSAIEKELQIGVMTTVKVDQIVINRILSVIYNPNRYRSKAAEAFSKEILPLFSTLNFNPDNIKPLSKE
IQPIEVVTNNVSQT
>Mature_333_residues
SELPFTLDQLRILKAIAAEGSFKRAADSLFVSQPAVSLQVQNLERQLNVPLFDRGGRRAQLTEAGHLLLTYGEKILSLCQ
ETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQKYPDVAVQLHVHSTRRTAWSVVNGQIDLAIIGGEVPPELQE
SLEVIPYAEDELALILPVSHSLAEKETIQKDDLYHLKFITLDSQSTIRKVIDQVLSQSNIDTRRLRVEMELSSIEAIKNA
VQSGLGVAFVSVSAIEKELQIGVMTTVKVDQIVINRILSVIYNPNRYRSKAAEAFSKEILPLFSTLNFNPDNIKPLSKEI
QPIEVVTNNVSQT

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=32.1917808219178, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=29.3286219081272, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=26.7857142857143, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=26.510067114094, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=28.1786941580756, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI87082132, Length=255, Percent_Identity=29.0196078431373, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1787530, Length=259, Percent_Identity=26.6409266409266, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=27.4247491638796, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788626, Length=256, Percent_Identity=30.46875, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788887, Length=275, Percent_Identity=28, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=27.5303643724696, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788297, Length=238, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081904, Length=179, Percent_Identity=30.7262569832402, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789204, Length=293, Percent_Identity=24.5733788395904, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790208, Length=304, Percent_Identity=28.6184210526316, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=27.4247491638796, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082024, Length=155, Percent_Identity=30.3225806451613, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786448, Length=274, Percent_Identity=29.9270072992701, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=262, Percent_Identity=25.5725190839695, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37118; Mature: 36987

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELPFTLDQLRILKAIAAEGSFKRAADSLFVSQPAVSLQVQNLERQLNVPLFDRGGRRA
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHEEHHHHHHHCCCCEECCCCCEE
QLTEAGHLLLTYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQ
EHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVAVQLHVHSTRRTAWSVVNGQIDLAIIGGEVPPELQESLEVIPYAEDELALILPVS
CCCCEEEEEEEECCHHHHHHEECCEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECC
HSLAEKETIQKDDLYHLKFITLDSQSTIRKVIDQVLSQSNIDTRRLRVEMELSSIEAIKN
HHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCHHEEEEEEHHHHHHHHHH
AVQSGLGVAFVSVSAIEKELQIGVMTTVKVDQIVINRILSVIYNPNRYRSKAAEAFSKEI
HHHCCCCEEEHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPLFSTLNFNPDNIKPLSKEIQPIEVVTNNVSQT
HHHHHHCCCCCCCCCHHHHCCCHHHHHHCCCCCC
>Mature Secondary Structure 
SELPFTLDQLRILKAIAAEGSFKRAADSLFVSQPAVSLQVQNLERQLNVPLFDRGGRRA
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHEEHHHHHHHCCCCEECCCCCEE
QLTEAGHLLLTYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQ
EHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVAVQLHVHSTRRTAWSVVNGQIDLAIIGGEVPPELQESLEVIPYAEDELALILPVS
CCCCEEEEEEEECCHHHHHHEECCEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECC
HSLAEKETIQKDDLYHLKFITLDSQSTIRKVIDQVLSQSNIDTRRLRVEMELSSIEAIKN
HHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCHHEEEEEEHHHHHHHHHH
AVQSGLGVAFVSVSAIEKELQIGVMTTVKVDQIVINRILSVIYNPNRYRSKAAEAFSKEI
HHHCCCCEEEHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPLFSTLNFNPDNIKPLSKEIQPIEVVTNNVSQT
HHHHHHCCCCCCCCCHHHHCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA