Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113475642
Identifier: 113475642
GI number: 113475642
Start: 3086414
End: 3089044
Strand: Reverse
Name: 113475642
Synonym: Tery_1979
Alternate gene names: NA
Gene position: 3089044-3086414 (Counterclockwise)
Preceding gene: 113475643
Following gene: 113475641
Centisome position: 39.86
GC content: 37.32
Gene sequence:
>2631_bases ATGCATACTTATAATATACACGAATTCAGCACTGGTATAAATGTAGAAAAATTGCCCGATGGCAGTTGGAGATCGCGGGG GTATAAGGTAGGAGAATATATGAACTTAACCTTGCCGCAAATTCCCTTAGTTGTTGAACGAGCGATCGCTAACAAAATGT TTGAGGTATCCAAGGATCGTCATAGTCAAAAACCTACTTTTGTAGGACGAGAGGTTAGGGGCAACAATGGAGCTCCCGGT TGGTCAGTGGTAGCGGTAGTCACTCCAGGAGGAGATGAATACGGGCGTTTTAATTCTTTTTATCGATATTTTTTATGTCA GGGAGTAGATCGACTCTGGGTAATATTAGATGAGATCAATAGTTATTGGCAACAATACGGACAACCACCAATTTTCAATC CATTGGAAATTAAAGAAATTGGCAAGCCGAACCATCACAATATTTCTAATAAGCCCCTAGTAACCTTACCTTCAGAGCTA AATGCTTTGGCAGGTAACCATCAACTACCTTTGATTCTTCAACCAGGAAAAGTGTCTGATCTACAGACAATTAATGCAAT GGCTGAGAAGATAGCTAATGGTCAACCTGTATCTTGGGCATACGATGTGGAGGCGGTGGAAGATGCAGAAAGATTTCTAG TTATTCAAGCGGCTGATGAAAAAGCGTATCAAGGTCTAAGGAAAATAGGGAATGCTTCAATTAATAATCCCAAAGCCACC CTTCCATCACATGTTGATGGAGCGGCCATTGAAACAGCAATAAAAGCTTTGAGCAGCGGTTCGCAAATTAAGCAGGAATG GATTCAAGCTCTTTTACAGGACGATCAAGTAACTTCAGAGCATTGGAAAATAATCTTTGATGATCGGGGTGCCCATACTG GGATTAAGCAGAGAAATTCTAGTGCTCAAATGGTGCGACTTTTAACTTTAAGGGCAATAATTCTTCCAGAGACTTTACCT GAGTATCTCGAATGGTTTGGTATTGATGGCAAAAATAAGAGAAAAGAGGATAATAAGCAAAAAGTTTCTCTTGCGTTTCA AGGAAAACTTCAAAGATATATTTTACAACTAAAGCCGTTAATTGATGAAAGCATGAAAAGTATCCTGGAGCAAATATTGA AGAAGAAGATATCAATTCCAGCATTCAGTTGGTTGTTAACTGCACAAAAAAGCCTTTGGTCGTCGTATCGCCCCTCGCTC GTGAAAAATGTCAGAAATGATTTAGAAACTATTGATCACAATTTGAAATCTGATGATAGCCCGTCGGAACCTTCGTTTGC TTGTGGAGATTCGATTTGGAAAAAATTGCAAAGTGAGCTGCGGAAACCCAACTATCGTGGTAGCTATTATCAACCTTTTG CGGATTTGTTTGAGAGGTTGCGTGACTATGAGTTAGCTTCCTATTTTTACCAAGTCAGTAAGGGGGTGGTGCCGAAAAAT TTATTTCTGAAAGCTCTTAAAAACAACGAAGACAAATCAGATCTTTGGGGTTTGACACTAAAGAGAGAAATTTCTTGGGA AGAACATCTGATTCGTTGCTTGATCAAAAATTCTTTGCGTTTGACTATAGCAATTGTTTTTTTGACAATCGGATATTTGA TAGGTAAAGGACAAAATCAAACACCTCAAGCACAAAAACCAGGGGAACAACAGCTACGAATAGCATATAGTCAGGGTTAT TTAAAGGGACAAGAAGATGCTATTAACAAAATCAAGAATACGACACCAAGTCCAAGTCCAAGTCCAAATATAAGTCCAAG TCCAAATCTAAGTCTAAGTCCAAGTCCAAGTCCAAGTCCAAGTCCTTCTATTCCAAGGAATATATTAGAAAAAGAGATGA ATATAGCACTTGACAATTTCCCTCAGAGTATCAGAGCAATTGATAAAATCACATCCGATCTAGCTTCTTTAGAAGTGGCA AAGCAAGAGGAATTAGAAAAACAAAAGTTTGTCCAAGAAATTCAGAAGATTCTTGCTAATGATTCAGCACTTAATTATGA GCAAGCAACTACTAAACTATATTTTTTGATAGTAGGGAAGCAAAAAAGAAAAGAGGCTCGCAAAAAATGGGTAAAAGCCA TCTATTCATACCAACAGAACAAACAGGAAAAGCTAAAAAATCCGCCTAATGGATATATAAATCCTGATGATAATACAGCT AATTTATTGAAGTGTAACGTAGCTGAATCTCTAAGTTGGAAATGGCAAGATTGGCCAGAGAATTGTTTACCAGAAATGAC AGAAGATCAAAAAAAGATTGCTACTAGTAAGGACAAGTTTAACGAGATAACTTACGAAGCAATCAGTCGAATTATATCAG AGTTGAGATATTTAGGACTTGATCAAGAAGCGATTCACCAAGCTATTCGCGAGACTATTGGTAATGTGAAGAATTTTGAA TATAAAAAGGCACGAGAAGCGATACCTGAGGGTAAAAACGCCTTAGTTATTGCTATTTATAAATACCAACAAAAAAACAA GATTCAAGGAGAACCTGATGGGATAATTAATGAGCCTAAAAAACCTTTAGATAGGACAATTCAAAATACGTTTAATATTT TGCTGGAACAGGTAAAAAATGAATTGGCAAATAACCCCAACAAATATAAAAATTCCCCAGAAAATCAATAA
Upstream 100 bases:
>100_bases TAGAAAAACCTAAAATGTGGCGGCCTTTTGGTTTAGTTTCGCCTATTTATTGGCTTTGTACTGGCAAACGCAATCAAGAA TTAGATAAGGATTAAAGCAA
Downstream 100 bases:
>100_bases ACATAATGATAACCTATCTTCACATCAGAAAATCAATAAACATAATGATAACCTACCTTCAAATCTTATTAGAAATAGCA TTCACCCTATTTTCCTGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 876; Mature: 876
Protein sequence:
>876_residues MHTYNIHEFSTGINVEKLPDGSWRSRGYKVGEYMNLTLPQIPLVVERAIANKMFEVSKDRHSQKPTFVGREVRGNNGAPG WSVVAVVTPGGDEYGRFNSFYRYFLCQGVDRLWVILDEINSYWQQYGQPPIFNPLEIKEIGKPNHHNISNKPLVTLPSEL NALAGNHQLPLILQPGKVSDLQTINAMAEKIANGQPVSWAYDVEAVEDAERFLVIQAADEKAYQGLRKIGNASINNPKAT LPSHVDGAAIETAIKALSSGSQIKQEWIQALLQDDQVTSEHWKIIFDDRGAHTGIKQRNSSAQMVRLLTLRAIILPETLP EYLEWFGIDGKNKRKEDNKQKVSLAFQGKLQRYILQLKPLIDESMKSILEQILKKKISIPAFSWLLTAQKSLWSSYRPSL VKNVRNDLETIDHNLKSDDSPSEPSFACGDSIWKKLQSELRKPNYRGSYYQPFADLFERLRDYELASYFYQVSKGVVPKN LFLKALKNNEDKSDLWGLTLKREISWEEHLIRCLIKNSLRLTIAIVFLTIGYLIGKGQNQTPQAQKPGEQQLRIAYSQGY LKGQEDAINKIKNTTPSPSPSPNISPSPNLSLSPSPSPSPSPSIPRNILEKEMNIALDNFPQSIRAIDKITSDLASLEVA KQEELEKQKFVQEIQKILANDSALNYEQATTKLYFLIVGKQKRKEARKKWVKAIYSYQQNKQEKLKNPPNGYINPDDNTA NLLKCNVAESLSWKWQDWPENCLPEMTEDQKKIATSKDKFNEITYEAISRIISELRYLGLDQEAIHQAIRETIGNVKNFE YKKAREAIPEGKNALVIAIYKYQQKNKIQGEPDGIINEPKKPLDRTIQNTFNILLEQVKNELANNPNKYKNSPENQ
Sequences:
>Translated_876_residues MHTYNIHEFSTGINVEKLPDGSWRSRGYKVGEYMNLTLPQIPLVVERAIANKMFEVSKDRHSQKPTFVGREVRGNNGAPG WSVVAVVTPGGDEYGRFNSFYRYFLCQGVDRLWVILDEINSYWQQYGQPPIFNPLEIKEIGKPNHHNISNKPLVTLPSEL NALAGNHQLPLILQPGKVSDLQTINAMAEKIANGQPVSWAYDVEAVEDAERFLVIQAADEKAYQGLRKIGNASINNPKAT LPSHVDGAAIETAIKALSSGSQIKQEWIQALLQDDQVTSEHWKIIFDDRGAHTGIKQRNSSAQMVRLLTLRAIILPETLP EYLEWFGIDGKNKRKEDNKQKVSLAFQGKLQRYILQLKPLIDESMKSILEQILKKKISIPAFSWLLTAQKSLWSSYRPSL VKNVRNDLETIDHNLKSDDSPSEPSFACGDSIWKKLQSELRKPNYRGSYYQPFADLFERLRDYELASYFYQVSKGVVPKN LFLKALKNNEDKSDLWGLTLKREISWEEHLIRCLIKNSLRLTIAIVFLTIGYLIGKGQNQTPQAQKPGEQQLRIAYSQGY LKGQEDAINKIKNTTPSPSPSPNISPSPNLSLSPSPSPSPSPSIPRNILEKEMNIALDNFPQSIRAIDKITSDLASLEVA KQEELEKQKFVQEIQKILANDSALNYEQATTKLYFLIVGKQKRKEARKKWVKAIYSYQQNKQEKLKNPPNGYINPDDNTA NLLKCNVAESLSWKWQDWPENCLPEMTEDQKKIATSKDKFNEITYEAISRIISELRYLGLDQEAIHQAIRETIGNVKNFE YKKAREAIPEGKNALVIAIYKYQQKNKIQGEPDGIINEPKKPLDRTIQNTFNILLEQVKNELANNPNKYKNSPENQ >Mature_876_residues MHTYNIHEFSTGINVEKLPDGSWRSRGYKVGEYMNLTLPQIPLVVERAIANKMFEVSKDRHSQKPTFVGREVRGNNGAPG WSVVAVVTPGGDEYGRFNSFYRYFLCQGVDRLWVILDEINSYWQQYGQPPIFNPLEIKEIGKPNHHNISNKPLVTLPSEL NALAGNHQLPLILQPGKVSDLQTINAMAEKIANGQPVSWAYDVEAVEDAERFLVIQAADEKAYQGLRKIGNASINNPKAT LPSHVDGAAIETAIKALSSGSQIKQEWIQALLQDDQVTSEHWKIIFDDRGAHTGIKQRNSSAQMVRLLTLRAIILPETLP EYLEWFGIDGKNKRKEDNKQKVSLAFQGKLQRYILQLKPLIDESMKSILEQILKKKISIPAFSWLLTAQKSLWSSYRPSL VKNVRNDLETIDHNLKSDDSPSEPSFACGDSIWKKLQSELRKPNYRGSYYQPFADLFERLRDYELASYFYQVSKGVVPKN LFLKALKNNEDKSDLWGLTLKREISWEEHLIRCLIKNSLRLTIAIVFLTIGYLIGKGQNQTPQAQKPGEQQLRIAYSQGY LKGQEDAINKIKNTTPSPSPSPNISPSPNLSLSPSPSPSPSPSIPRNILEKEMNIALDNFPQSIRAIDKITSDLASLEVA KQEELEKQKFVQEIQKILANDSALNYEQATTKLYFLIVGKQKRKEARKKWVKAIYSYQQNKQEKLKNPPNGYINPDDNTA NLLKCNVAESLSWKWQDWPENCLPEMTEDQKKIATSKDKFNEITYEAISRIISELRYLGLDQEAIHQAIRETIGNVKNFE YKKAREAIPEGKNALVIAIYKYQQKNKIQGEPDGIINEPKKPLDRTIQNTFNILLEQVKNELANNPNKYKNSPENQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99758; Mature: 99758
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTYNIHEFSTGINVEKLPDGSWRSRGYKVGEYMNLTLPQIPLVVERAIANKMFEVSKDR CCCCCCCHHHCCCCCEECCCCCHHHCCEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHH HSQKPTFVGREVRGNNGAPGWSVVAVVTPGGDEYGRFNSFYRYFLCQGVDRLWVILDEIN CCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH SYWQQYGQPPIFNPLEIKEIGKPNHHNISNKPLVTLPSELNALAGNHQLPLILQPGKVSD HHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCEEECCCCCCH LQTINAMAEKIANGQPVSWAYDVEAVEDAERFLVIQAADEKAYQGLRKIGNASINNPKAT HHHHHHHHHHHCCCCCCEEEECHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCC LPSHVDGAAIETAIKALSSGSQIKQEWIQALLQDDQVTSEHWKIIFDDRGAHTGIKQRNS CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCC SAQMVRLLTLRAIILPETLPEYLEWFGIDGKNKRKEDNKQKVSLAFQGKLQRYILQLKPL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IDESMKSILEQILKKKISIPAFSWLLTAQKSLWSSYRPSLVKNVRNDLETIDHNLKSDDS HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC PSEPSFACGDSIWKKLQSELRKPNYRGSYYQPFADLFERLRDYELASYFYQVSKGVVPKN CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LFLKALKNNEDKSDLWGLTLKREISWEEHLIRCLIKNSLRLTIAIVFLTIGYLIGKGQNQ HHHHHHHCCCCCHHHHCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC TPQAQKPGEQQLRIAYSQGYLKGQEDAINKIKNTTPSPSPSPNISPSPNLSLSPSPSPSP CCCCCCCCHHHHEEHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPSIPRNILEKEMNIALDNFPQSIRAIDKITSDLASLEVAKQEELEKQKFVQEIQKILAN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DSALNYEQATTKLYFLIVGKQKRKEARKKWVKAIYSYQQNKQEKLKNPPNGYINPDDNTA CCCCCHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCC NLLKCNVAESLSWKWQDWPENCLPEMTEDQKKIATSKDKFNEITYEAISRIISELRYLGL CEEEECHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DQEAIHQAIRETIGNVKNFEYKKAREAIPEGKNALVIAIYKYQQKNKIQGEPDGIINEPK CHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC KPLDRTIQNTFNILLEQVKNELANNPNKYKNSPENQ HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC >Mature Secondary Structure MHTYNIHEFSTGINVEKLPDGSWRSRGYKVGEYMNLTLPQIPLVVERAIANKMFEVSKDR CCCCCCCHHHCCCCCEECCCCCHHHCCEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHH HSQKPTFVGREVRGNNGAPGWSVVAVVTPGGDEYGRFNSFYRYFLCQGVDRLWVILDEIN CCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH SYWQQYGQPPIFNPLEIKEIGKPNHHNISNKPLVTLPSELNALAGNHQLPLILQPGKVSD HHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCEEECCCCCCH LQTINAMAEKIANGQPVSWAYDVEAVEDAERFLVIQAADEKAYQGLRKIGNASINNPKAT HHHHHHHHHHHCCCCCCEEEECHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCC LPSHVDGAAIETAIKALSSGSQIKQEWIQALLQDDQVTSEHWKIIFDDRGAHTGIKQRNS CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCC SAQMVRLLTLRAIILPETLPEYLEWFGIDGKNKRKEDNKQKVSLAFQGKLQRYILQLKPL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH IDESMKSILEQILKKKISIPAFSWLLTAQKSLWSSYRPSLVKNVRNDLETIDHNLKSDDS HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC PSEPSFACGDSIWKKLQSELRKPNYRGSYYQPFADLFERLRDYELASYFYQVSKGVVPKN CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LFLKALKNNEDKSDLWGLTLKREISWEEHLIRCLIKNSLRLTIAIVFLTIGYLIGKGQNQ HHHHHHHCCCCCHHHHCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC TPQAQKPGEQQLRIAYSQGYLKGQEDAINKIKNTTPSPSPSPNISPSPNLSLSPSPSPSP CCCCCCCCHHHHEEHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPSIPRNILEKEMNIALDNFPQSIRAIDKITSDLASLEVAKQEELEKQKFVQEIQKILAN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DSALNYEQATTKLYFLIVGKQKRKEARKKWVKAIYSYQQNKQEKLKNPPNGYINPDDNTA CCCCCHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCC NLLKCNVAESLSWKWQDWPENCLPEMTEDQKKIATSKDKFNEITYEAISRIISELRYLGL CEEEECHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DQEAIHQAIRETIGNVKNFEYKKAREAIPEGKNALVIAIYKYQQKNKIQGEPDGIINEPK CHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC KPLDRTIQNTFNILLEQVKNELANNPNKYKNSPENQ HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA