Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
---|---|
Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is fur [H]
Identifier: 113475618
GI number: 113475618
Start: 3027869
End: 3028264
Strand: Reverse
Name: fur [H]
Synonym: Tery_1953
Alternate gene names: 113475618
Gene position: 3028264-3027869 (Counterclockwise)
Preceding gene: 113475621
Following gene: 113475615
Centisome position: 39.07
GC content: 34.34
Gene sequence:
>396_bases ATGAAAACCAAGCGCACCCATTCTCAAGAACGTATTTTAAAATTACTAAAAAACCAGAAGCGATCGCTATCTGCTCAAGA TATTTATTTAAAACTACGCAGATATGACAGACCTCTGGGGCTAGCAACAATATATCGTTCTTTGGATGCTCTCAAAAAAG AGGGTGTAGTAATTGTTCGGACTTTGGTCAATGGTGAATCTGTTTATAGTTGTCTACAGCAAGACCAATATTATTTGAAT TGTGTTAAATGTGGGACTTCTATACCTATTAATAAATGTCCTGTCTACAATTTGGAGGATAAATTACAGCAGTCCTACAA ATTTAAGATTTTTTACCATACTTTGGAATTTTTTGGGCTTTGTGAACGCTGTACCTTAACTGAAGATATTTCTTAA
Upstream 100 bases:
>100_bases TGATATTTTTTGATCACTTTAGTACAAAGTTTTAGATTTTAATTGAACTACTCACTCAGATATTATCTGTTAAGTTTAAC CTAAATTAACTATATTGGCC
Downstream 100 bases:
>100_bases CATTCTCCCCAGCTATTAGTTTGGGGTAGTCTTACAATCTAAAGCTAATAAAATACGGATTGACCTTTATCTTAGTCTAC TCCAAAGGTTGGCCCTAGTC
Product: ferric uptake regulator family protein
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 131; Mature: 131
Protein sequence:
>131_residues MKTKRTHSQERILKLLKNQKRSLSAQDIYLKLRRYDRPLGLATIYRSLDALKKEGVVIVRTLVNGESVYSCLQQDQYYLN CVKCGTSIPINKCPVYNLEDKLQQSYKFKIFYHTLEFFGLCERCTLTEDIS
Sequences:
>Translated_131_residues MKTKRTHSQERILKLLKNQKRSLSAQDIYLKLRRYDRPLGLATIYRSLDALKKEGVVIVRTLVNGESVYSCLQQDQYYLN CVKCGTSIPINKCPVYNLEDKLQQSYKFKIFYHTLEFFGLCERCTLTEDIS >Mature_131_residues MKTKRTHSQERILKLLKNQKRSLSAQDIYLKLRRYDRPLGLATIYRSLDALKKEGVVIVRTLVNGESVYSCLQQDQYYLN CVKCGTSIPINKCPVYNLEDKLQQSYKFKIFYHTLEFFGLCERCTLTEDIS
Specific function: Iron uptake repressor. Acts on the transcription of ferri-siderophore uptake genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
None
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 15380; Mature: 15380
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTKRTHSQERILKLLKNQKRSLSAQDIYLKLRRYDRPLGLATIYRSLDALKKEGVVIVR CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEE TLVNGESVYSCLQQDQYYLNCVKCGTSIPINKCPVYNLEDKLQQSYKFKIFYHTLEFFGL EECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CERCTLTEDIS HHHCCCCCCCC >Mature Secondary Structure MKTKRTHSQERILKLLKNQKRSLSAQDIYLKLRRYDRPLGLATIYRSLDALKKEGVVIVR CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEE TLVNGESVYSCLQQDQYYLNCVKCGTSIPINKCPVYNLEDKLQQSYKFKIFYHTLEFFGL EECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CERCTLTEDIS HHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 9701813 [H]