Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475610

Identifier: 113475610

GI number: 113475610

Start: 3014153

End: 3014392

Strand: Reverse

Name: 113475610

Synonym: Tery_1944

Alternate gene names: NA

Gene position: 3014392-3014153 (Counterclockwise)

Preceding gene: 113475613

Following gene: 113475609

Centisome position: 38.89

GC content: 39.17

Gene sequence:

>240_bases
TTGCGTCGAAACCTTCCAACTATTATGGGAAATAGTGGATCTCAAGGAGATGCTACTTTGACGTCACTGATGGCTGGAAA
GTTACTCCAAGTTTTCTTCCGGATGGAGTTGTTAGCAAAATTTACATCAGTTGAGTTGAGGGAGAAAACACCAAAGTATG
AGATAATCTTGCTTGCTCAAAGAAAAACCCTTTGTTGCTCTAAGTCTGAAATGATGCTGAGAAATTCAGTGAGTCAATAA

Upstream 100 bases:

>100_bases
ACTAGAAGTCTCTGTGAGATCAAAAAAAAACAAAATTTTGCTCTCAAAAGTTGTAGCTCCTATATGAAAAAGTCATAAAA
GGAAGGTTACTTGAAGATCA

Downstream 100 bases:

>100_bases
TCTCACTATCTCAAATTTAGAAGTGTTCCTATACCTTATACTGAGAAGACTCAGCAATTTAAGCACGAAACAGCGGTCGC
ATTTTTTCCTAGTCATATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MRRNLPTIMGNSGSQGDATLTSLMAGKLLQVFFRMELLAKFTSVELREKTPKYEIILLAQRKTLCCSKSEMMLRNSVSQ

Sequences:

>Translated_79_residues
MRRNLPTIMGNSGSQGDATLTSLMAGKLLQVFFRMELLAKFTSVELREKTPKYEIILLAQRKTLCCSKSEMMLRNSVSQ
>Mature_79_residues
MRRNLPTIMGNSGSQGDATLTSLMAGKLLQVFFRMELLAKFTSVELREKTPKYEIILLAQRKTLCCSKSEMMLRNSVSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8943; Mature: 8943

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
7.6 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
7.6 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRNLPTIMGNSGSQGDATLTSLMAGKLLQVFFRMELLAKFTSVELREKTPKYEIILLAQ
CCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
RKTLCCSKSEMMLRNSVSQ
CCCHHCCHHHHHHHHCCCC
>Mature Secondary Structure
MRRNLPTIMGNSGSQGDATLTSLMAGKLLQVFFRMELLAKFTSVELREKTPKYEIILLAQ
CCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
RKTLCCSKSEMMLRNSVSQ
CCCHHCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA