Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475606

Identifier: 113475606

GI number: 113475606

Start: 3005400

End: 3006068

Strand: Reverse

Name: 113475606

Synonym: Tery_1939

Alternate gene names: NA

Gene position: 3006068-3005400 (Counterclockwise)

Preceding gene: 113475607

Following gene: 113475599

Centisome position: 38.79

GC content: 28.85

Gene sequence:

>669_bases
ATGAACAACTTAAACGAATATCTAACAGCAATTCAAACACTATTAAAGAATAGTGATTTTTGGCAAAAGGTTGCTATTGC
TATTATCTCTGCTTTTTCAGTAGCTCTATTTAATTATTTCTCATCAAACAAGCAACGTCAAGACCAAGCTATGGAGCTTT
CCTATACAACAAATATATTGAGTATTTTAGAATTCAAAAAAGATATAGACCAGAAAAATATTAGTATCCTTTATGGTGAA
GATTATGAAGTTGTAGATTTGTATGTCATCTCTTGCGACATTGAAAATACTGGTAAAAAAGTAATTAAAAATCAAGAAAT
TACTTTTGAGTTTATTTCTACAAATGTTGGAGTTTTAGAACAATTTTTTGAACCACCTTTGAATGATAATGCAATGGGTA
TAGAGGAAATTGAGATAGAGGATATTAAGCAAGGTGAAGTAAAAAAAAGGTATTTAATAAGAGAAATTTTACCTAAACGT
AAAGTAGGATTTCGATTTTTGTCGGGAAGGCAAACTCAGGAGGATGAAGTACCAAAATTGTTTTGCTCTATTCAAGATAT
TAGTAAAGTTGAACTCATTCCAAGAACATATAAAGGAGAGAGGGATGAAATTGCTATAATTATGAATTTGTTATCTCAGT
TTTTGATGATTTATACTAATAAAAATTAG

Upstream 100 bases:

>100_bases
GCCTTCACTATTGAACTGGATATAATATAAATTTAAATGGTAGAGCTTAATATCACAAATTCAGCAACTCAAGTTAATTA
TTGTTATTTAAAGCCAGAAT

Downstream 100 bases:

>100_bases
GCAATTATTAGTCGCACTAAACCATATATTTTTAAAATTACTTTTTGATAATTATTATATTTTAATCTGAATCTTTCTTG
AGAAATTATAAATATTTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNILSILEFKKDIDQKNISILYGE
DYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLEQFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKR
KVGFRFLSGRQTQEDEVPKLFCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN

Sequences:

>Translated_222_residues
MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNILSILEFKKDIDQKNISILYGE
DYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLEQFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKR
KVGFRFLSGRQTQEDEVPKLFCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN
>Mature_222_residues
MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNILSILEFKKDIDQKNISILYGE
DYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLEQFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKR
KVGFRFLSGRQTQEDEVPKLFCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25838; Mature: 25838

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNIL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SILEFKKDIDQKNISILYGEDYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLE
HHHHHHHHCCCCCEEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCHHHHH
QFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKRKVGFRFLSGRQTQEDEVPKL
HHHCCCCCCCCCCCEEEEHHHCCCCHHHHHHHHHHHCCCHHHCEEECCCCCCCHHHHHHH
FCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNIL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SILEFKKDIDQKNISILYGEDYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLE
HHHHHHHHCCCCCEEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCHHHHH
QFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKRKVGFRFLSGRQTQEDEVPKL
HHHCCCCCCCCCCCEEEEHHHCCCCHHHHHHHHHHHCCCHHHCEEECCCCCCCHHHHHHH
FCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA