| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475606
Identifier: 113475606
GI number: 113475606
Start: 3005400
End: 3006068
Strand: Reverse
Name: 113475606
Synonym: Tery_1939
Alternate gene names: NA
Gene position: 3006068-3005400 (Counterclockwise)
Preceding gene: 113475607
Following gene: 113475599
Centisome position: 38.79
GC content: 28.85
Gene sequence:
>669_bases ATGAACAACTTAAACGAATATCTAACAGCAATTCAAACACTATTAAAGAATAGTGATTTTTGGCAAAAGGTTGCTATTGC TATTATCTCTGCTTTTTCAGTAGCTCTATTTAATTATTTCTCATCAAACAAGCAACGTCAAGACCAAGCTATGGAGCTTT CCTATACAACAAATATATTGAGTATTTTAGAATTCAAAAAAGATATAGACCAGAAAAATATTAGTATCCTTTATGGTGAA GATTATGAAGTTGTAGATTTGTATGTCATCTCTTGCGACATTGAAAATACTGGTAAAAAAGTAATTAAAAATCAAGAAAT TACTTTTGAGTTTATTTCTACAAATGTTGGAGTTTTAGAACAATTTTTTGAACCACCTTTGAATGATAATGCAATGGGTA TAGAGGAAATTGAGATAGAGGATATTAAGCAAGGTGAAGTAAAAAAAAGGTATTTAATAAGAGAAATTTTACCTAAACGT AAAGTAGGATTTCGATTTTTGTCGGGAAGGCAAACTCAGGAGGATGAAGTACCAAAATTGTTTTGCTCTATTCAAGATAT TAGTAAAGTTGAACTCATTCCAAGAACATATAAAGGAGAGAGGGATGAAATTGCTATAATTATGAATTTGTTATCTCAGT TTTTGATGATTTATACTAATAAAAATTAG
Upstream 100 bases:
>100_bases GCCTTCACTATTGAACTGGATATAATATAAATTTAAATGGTAGAGCTTAATATCACAAATTCAGCAACTCAAGTTAATTA TTGTTATTTAAAGCCAGAAT
Downstream 100 bases:
>100_bases GCAATTATTAGTCGCACTAAACCATATATTTTTAAAATTACTTTTTGATAATTATTATATTTTAATCTGAATCTTTCTTG AGAAATTATAAATATTTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNILSILEFKKDIDQKNISILYGE DYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLEQFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKR KVGFRFLSGRQTQEDEVPKLFCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN
Sequences:
>Translated_222_residues MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNILSILEFKKDIDQKNISILYGE DYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLEQFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKR KVGFRFLSGRQTQEDEVPKLFCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN >Mature_222_residues MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNILSILEFKKDIDQKNISILYGE DYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLEQFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKR KVGFRFLSGRQTQEDEVPKLFCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25838; Mature: 25838
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNIL CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH SILEFKKDIDQKNISILYGEDYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLE HHHHHHHHCCCCCEEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCHHHHH QFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKRKVGFRFLSGRQTQEDEVPKL HHHCCCCCCCCCCCEEEEHHHCCCCHHHHHHHHHHHCCCHHHCEEECCCCCCCHHHHHHH FCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNNLNEYLTAIQTLLKNSDFWQKVAIAIISAFSVALFNYFSSNKQRQDQAMELSYTTNIL CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH SILEFKKDIDQKNISILYGEDYEVVDLYVISCDIENTGKKVIKNQEITFEFISTNVGVLE HHHHHHHHCCCCCEEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCHHHHH QFFEPPLNDNAMGIEEIEIEDIKQGEVKKRYLIREILPKRKVGFRFLSGRQTQEDEVPKL HHHCCCCCCCCCCCEEEEHHHCCCCHHHHHHHHHHHCCCHHHCEEECCCCCCCHHHHHHH FCSIQDISKVELIPRTYKGERDEIAIIMNLLSQFLMIYTNKN HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA