Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113475582
Identifier: 113475582
GI number: 113475582
Start: 2965671
End: 2966024
Strand: Reverse
Name: 113475582
Synonym: Tery_1915
Alternate gene names: NA
Gene position: 2966024-2965671 (Counterclockwise)
Preceding gene: 113475586
Following gene: 113475580
Centisome position: 38.27
GC content: 33.9
Gene sequence:
>354_bases ATGCCATTAATCAAAGTCAAAACTTCCGTTGCCCAACTAGAAAAAGATAAAATTGACAACCTTCTCAAACAACTTTCATC TAGTATGGCCAAGCATTTTAGTAAATCAGAATCTTACGTAATGACAGCCTTTGAATCTGATATTCCCATGACTTTTGGTG GAAATAGTGATGAGCCGACTTGCTACATAGAAATTAAAAGTATTGGTAGTATGAAGCCTAACCAAACCAAAGAAATGAGT CAAGATTTTTGTGAACAAATTAATAAAACTCTCGGGGTTCCTAAAAATCGAATCTATATAGAATTTTCTGATGCTCAAGG TTATCTTTGGGGTTGGAATAGTTCAACTTTTTGA
Upstream 100 bases:
>100_bases CTTTCTTTAGGTCTATTATAGACAATTGATTAGTTAACTTTTATAATTGAAGACCTACGTAAATAGTTTATTTTGTTCAT CCTCAACTATTAATCGAACT
Downstream 100 bases:
>100_bases TAACTTTTCCTGATTTTTTTGAGGAAATTATAAGGCTACGGGCAACTAAAAAGTCATAAGTCAAAAGTAATTTATTAAAG AATTTTAATACTTATATAGC
Product: macrophage migration inhibitory factor
Products: NA
Alternate protein names: Macrophage Migration Inhibitory Factor; ATLS1-Like Light-Inducible Protein; Phenylpyruvate Tautomerase; Macrophage Migration Inhibitory Factor Superfamily; 4-Oxalocrotonate Tautomerase; Phenylpyruvate Tautomerase Family Protein; MIF/Phenylpyruvate Tautomerase Family Protein; Macrophage Migration Inhibitory Factor Family; Glycosyl Transferase
Number of amino acids: Translated: 117; Mature: 116
Protein sequence:
>117_residues MPLIKVKTSVAQLEKDKIDNLLKQLSSSMAKHFSKSESYVMTAFESDIPMTFGGNSDEPTCYIEIKSIGSMKPNQTKEMS QDFCEQINKTLGVPKNRIYIEFSDAQGYLWGWNSSTF
Sequences:
>Translated_117_residues MPLIKVKTSVAQLEKDKIDNLLKQLSSSMAKHFSKSESYVMTAFESDIPMTFGGNSDEPTCYIEIKSIGSMKPNQTKEMS QDFCEQINKTLGVPKNRIYIEFSDAQGYLWGWNSSTF >Mature_116_residues PLIKVKTSVAQLEKDKIDNLLKQLSSSMAKHFSKSESYVMTAFESDIPMTFGGNSDEPTCYIEIKSIGSMKPNQTKEMSQ DFCEQINKTLGVPKNRIYIEFSDAQGYLWGWNSSTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13261; Mature: 13130
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLIKVKTSVAQLEKDKIDNLLKQLSSSMAKHFSKSESYVMTAFESDIPMTFGGNSDEPT CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCE CYIEIKSIGSMKPNQTKEMSQDFCEQINKTLGVPKNRIYIEFSDAQGYLWGWNSSTF EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCC >Mature Secondary Structure PLIKVKTSVAQLEKDKIDNLLKQLSSSMAKHFSKSESYVMTAFESDIPMTFGGNSDEPT CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCE CYIEIKSIGSMKPNQTKEMSQDFCEQINKTLGVPKNRIYIEFSDAQGYLWGWNSSTF EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA