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The map label for this gene is rbpE [H]

Identifier: 113475531

GI number: 113475531

Start: 2848949

End: 2849218

Strand: Reverse

Name: rbpE [H]

Synonym: Tery_1863

Alternate gene names: 113475531

Gene position: 2849218-2848949 (Counterclockwise)

Preceding gene: 113475532

Following gene: 113475530

Centisome position: 36.76

GC content: 44.44

Gene sequence:

>270_bases
ATGTCGGTTTACGTTGGAAACCTTTCCTATGATGCAACAGATGAGGATCTAAAGACTGCCTTTGCTAAATATGGTAATGT
TAAGCGAGTTCAAGTCCCTAATGATCGTGAAACTGGTCGCCCCCGGGGCTTTGCTTTTGTAGAAATGGAGAGTGAAGATG
AAGAGACAGCAGCAATTGAGGGACTGGATGGTTCTGAATTAATGGGACGTATTCTCAAAGTTAATAAGGCCAGGCCACGA
GAAGAACGAGGTAGTGGTGGTAGAAGATAG

Upstream 100 bases:

>100_bases
AGTTTTTGCTTTCAGTGATGAGCTTTTTGATGATATTTCATCTGGCATTACTGGCCTTCCGAAATCTCTCTATATTAAAT
TCCTATTTTGGAGGTCAATC

Downstream 100 bases:

>100_bases
AGCTTCTCTAGTGACCAATAACAAAGTCAGAAGTCAGAAGTTGTTTTTGTAATGATATAGGAGTGAGCAACCCTCCAGAA
ATATTTTGCCATTCAAGGTG

Product: RNA-binding region RNP-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSVYVGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIEGLDGSELMGRILKVNKARPR
EERGSGGRR

Sequences:

>Translated_89_residues
MSVYVGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIEGLDGSELMGRILKVNKARPR
EERGSGGRR
>Mature_88_residues
SVYVGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIEGLDGSELMGRILKVNKARPRE
ERGSGGRR

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI303305009, Length=77, Percent_Identity=44.1558441558442, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI45439316, Length=84, Percent_Identity=44.047619047619, Blast_Score=72, Evalue=9e-14,
Organism=Homo sapiens, GI5174637, Length=84, Percent_Identity=44.047619047619, Blast_Score=72, Evalue=9e-14,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=42.1052631578947, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=40, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI4826972, Length=75, Percent_Identity=38.6666666666667, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=47.5, Blast_Score=79, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=44.7368421052632, Blast_Score=79, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=50.6493506493506, Blast_Score=78, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=46.7532467532467, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17539498, Length=78, Percent_Identity=39.7435897435897, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=42.3076923076923, Blast_Score=75, Evalue=7e-15,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19920866, Length=74, Percent_Identity=37.8378378378378, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582412, Length=74, Percent_Identity=37.8378378378378, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358099, Length=78, Percent_Identity=42.3076923076923, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9926; Mature: 9795

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVYVGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIE
CEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEC
GLDGSELMGRILKVNKARPREERGSGGRR
CCCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVYVGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIE
EEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEC
GLDGSELMGRILKVNKARPREERGSGGRR
CCCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]