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The map label for this gene is ybiH [C]

Identifier: 113475461

GI number: 113475461

Start: 2733588

End: 2734250

Strand: Reverse

Name: ybiH [C]

Synonym: Tery_1790

Alternate gene names: 113475461

Gene position: 2734250-2733588 (Counterclockwise)

Preceding gene: 113475462

Following gene: 113475460

Centisome position: 35.28

GC content: 37.56

Gene sequence:

>663_bases
ATGATTAAATCAAACCAAGCTGCGTATTCTGGAAAACAAACACAGGATTCAATGAGTAAAAATTCAACTATTGATACAAA
GGAAAAAATTCTCAATGCCGCAGAAAAACGGTTTGCCTCTCTGGGTTTTACAGGAACTTCACTAAGAGCTATAGTCCGGG
AAGCCGATGTAAACTTGGCGGCCATTCATTATCACTTTGGTTCCAAAGAGGAACTGTTTATTGCAGTAGTCCGACGGGTA
GGACAACCCATTGTTCAAGAACAACTACGACAACTCAAAATTCTAGAAGAGTCAGATCAGCTCCCTTCACTGCCGGAAAT
TTTAACAGCTTTTGTCAGCCCTCCCCTAAAGATGCTTCAACAGGGATCAGAAGAATCTCGAATTCATGCACAATTTATGG
GGTGTTGCCGCACCGAACTCCACCCAATTCATAAACGGGTAGAACAAGAATTTAGAACTATTCAACAAAGATTTCTATAC
ATACTAACAAAAGTGCTACCCCATAAATATCCTACAGAATTAAAGTGGAATCTTGATTTAATAGTTGCAATGGTAGTGCG
CAGTTTGAATCAAATTGAAGAATCAGAAATATTAAGTGACAATTCTATTGATCAATTTATAGAGCATCTTGTAACTTTTA
TAAGTTATGGAATTAGTGTTTGA

Upstream 100 bases:

>100_bases
CGTAATTCCTGTTAGAATAAAAGTGTATTATTTAAAATAATCGTGATTATTTGCGAAAAGAAAACATAGATTGAAAATAA
ACTGGAAGGGTAGCTAATTG

Downstream 100 bases:

>100_bases
TTTTAGATATCAATTAATAATATTATGTTTACTTAAAAATTCTGAGATGAAACTTTGATCAAAGTTATGCCTTATAGTAA
ATTTACCCTGAGGAAAGCCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator PsrA; TetR Family Regulatory Protein; Regulatory Protein Tetr; Transcription Regulator Protein; PsrA Protein; TetR Family Transcription Factor; TRANSCRIPTIONal REGULATOR TetR Family; Transcriptional Regulator Transcription Regulator Protein; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MIKSNQAAYSGKQTQDSMSKNSTIDTKEKILNAAEKRFASLGFTGTSLRAIVREADVNLAAIHYHFGSKEELFIAVVRRV
GQPIVQEQLRQLKILEESDQLPSLPEILTAFVSPPLKMLQQGSEESRIHAQFMGCCRTELHPIHKRVEQEFRTIQQRFLY
ILTKVLPHKYPTELKWNLDLIVAMVVRSLNQIEESEILSDNSIDQFIEHLVTFISYGISV

Sequences:

>Translated_220_residues
MIKSNQAAYSGKQTQDSMSKNSTIDTKEKILNAAEKRFASLGFTGTSLRAIVREADVNLAAIHYHFGSKEELFIAVVRRV
GQPIVQEQLRQLKILEESDQLPSLPEILTAFVSPPLKMLQQGSEESRIHAQFMGCCRTELHPIHKRVEQEFRTIQQRFLY
ILTKVLPHKYPTELKWNLDLIVAMVVRSLNQIEESEILSDNSIDQFIEHLVTFISYGISV
>Mature_220_residues
MIKSNQAAYSGKQTQDSMSKNSTIDTKEKILNAAEKRFASLGFTGTSLRAIVREADVNLAAIHYHFGSKEELFIAVVRRV
GQPIVQEQLRQLKILEESDQLPSLPEILTAFVSPPLKMLQQGSEESRIHAQFMGCCRTELHPIHKRVEQEFRTIQQRFLY
ILTKVLPHKYPTELKWNLDLIVAMVVRSLNQIEESEILSDNSIDQFIEHLVTFISYGISV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25140; Mature: 25140

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSNQAAYSGKQTQDSMSKNSTIDTKEKILNAAEKRFASLGFTGTSLRAIVREADVNLA
CCCCCCCHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEE
AIHYHFGSKEELFIAVVRRVGQPIVQEQLRQLKILEESDQLPSLPEILTAFVSPPLKMLQ
EEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
QGSEESRIHAQFMGCCRTELHPIHKRVEQEFRTIQQRFLYILTKVLPHKYPTELKWNLDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
IVAMVVRSLNQIEESEILSDNSIDQFIEHLVTFISYGISV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKSNQAAYSGKQTQDSMSKNSTIDTKEKILNAAEKRFASLGFTGTSLRAIVREADVNLA
CCCCCCCHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEE
AIHYHFGSKEELFIAVVRRVGQPIVQEQLRQLKILEESDQLPSLPEILTAFVSPPLKMLQ
EEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
QGSEESRIHAQFMGCCRTELHPIHKRVEQEFRTIQQRFLYILTKVLPHKYPTELKWNLDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
IVAMVVRSLNQIEESEILSDNSIDQFIEHLVTFISYGISV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA