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The map label for this gene is 113474663

Identifier: 113474663

GI number: 113474663

Start: 1332219

End: 1333871

Strand: Reverse

Name: 113474663

Synonym: Tery_0838

Alternate gene names: NA

Gene position: 1333871-1332219 (Counterclockwise)

Preceding gene: 113474665

Following gene: 113474662

Centisome position: 17.21

GC content: 40.11

Gene sequence:

>1653_bases
ATGAAGATTACCTTTAACAAATTCGTCAAATATGCCCCCAGTGTTCTCAGTATCACATTATTTATAGCAAATCCTGCAGA
GGCTAACCGACCAATACAAATTTCTCAAGCATTTCGTTCACTACCGATAGATGATCCCTCATTAGAAATTCCCAGTGTAT
CTGAGCTAGCAGTAGAAGAGGCAATAGATCAGGTAACATCTGTCTCTCAATTATCAGATGTACAGCCTACAGACTGGGCA
TTCCAAGCATTACAATCATTAGTAGAACGTTATGGTTGTATAGCAGGTTATCCCAATGGAACCTACAAAGGCAACCGGGC
CATGACTCGCTTTGAATTTGCTGCAGGATTAAATGCTTGCCTAGACAGAATCACAGAATTAACTGCAGCAGCAACCAGTA
ACCTAGTGACTAGAGAAGACTTAGCTATATTGCAACGTTTACAAGAAGAATTTGCAACCGAACTAGCAGTATTGCGCGGT
CGTATAGATTCTTTAGAAGCACGCACAGCAGAACTAGAAAATAACCAATTTTCCACAACAACCAAACTCAATGGTGAAAT
TCTGTTTTGGTTAAGTGATACCCTCGGAGAAAGAGCAAATGCCCGTGGAGAGTCTTCTGGCAATAACAAAACTCAGACTT
TCTTTTCTTATCGCACCTGGTTACACTTTGAGAGTAGCTTTACTGGAGAAGATTTGCTATTCACCCGTCTACAAGCTAAT
AATACTTACGATTTGAGTGAGCCAGATCTTACCAATACTTTAATGACTCGTACTGCCATTGATGAAGCTGATAGTAATGA
TAATTTTGGTATTGACCTGATGTTCTATCAATTTCCCATTGGCGATCGCGCCCAAGCCATCATCGGCCCTATTGGAGTTG
ACCTAGATGACGTTTCCACAGTTCTGTCACCCTTTGCAGAAGAAGGGGATGGTACCATTTCTAGATTTGGACGACGCAAC
CCTACCAGTTTCCGCGGTCCGGCTAATGCAGCTCTTGGTTTTAGCTACGCATTTAATGATATGTTTATGGTCAATGTTGC
TTACTTAACAGACGATCCAGCAAATCCTGCTGAAGGTGCGGGTGCATTCAATGGGGCTTACAGTGCATTAGGTCAACTTA
TAATTGAACCTAATGATACCTTGGCATTTACCTTGGGTTATGTTCGTAAATATTGGGGTAAGGATGGGGTGGATATTACT
AATGGGACTGGTAGTTTCAAAGCTCAAGACCCCTTTGATGGTCTTTCCACAACTGCTGATAATGTTGGGTTACAAGCTCA
TTGGAGAGTCAATGAAAAGTTTGAGATAGGAGGTTGGTTTGGTTCCACCTGGGCGCGGCCGGAAACTAGCAATGGTGATG
AAGACGATATTACTATTATTAATGGAATGTTATATTTTGCTTTCCCAGATTTGTTGATAGAAGGAAATTTGGGTGGTTTG
ATGGTTGGTGTACCTCCTATTGTTACTGATGGTGGTGATGATGATTCATTGAAAGATGATGATACATCTATACATATAGA
GGCAATTTATCGTTTTCAAATTAATGATAATATTTCTTTGACTCCTGGTTTATTTGTGATTACAAATCCTAATCATGATG
ATGTTAATGATACTATTTGGATAAGTACATTCCGAACTCAGTTTGTATTTTAA

Upstream 100 bases:

>100_bases
TTTTTTCCTTAATTTTCAACAACTCTAATATATGACTTTTACCCTTCCATTAATTAGGGGTAAATATTGCTAAGTCTTAA
GAAATACAATAGAAAAATTA

Downstream 100 bases:

>100_bases
CTAAAATCAGCGATCGCTAATATAAATTAGTGGAATTAACGATATTTTTTTTATGAGTGGCCATCTCAAAAAAAGAATTA
CTTAAAATTTCAAATCAAAC

Product: carbohydrate-selective porin OprB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MKITFNKFVKYAPSVLSITLFIANPAEANRPIQISQAFRSLPIDDPSLEIPSVSELAVEEAIDQVTSVSQLSDVQPTDWA
FQALQSLVERYGCIAGYPNGTYKGNRAMTRFEFAAGLNACLDRITELTAAATSNLVTREDLAILQRLQEEFATELAVLRG
RIDSLEARTAELENNQFSTTTKLNGEILFWLSDTLGERANARGESSGNNKTQTFFSYRTWLHFESSFTGEDLLFTRLQAN
NTYDLSEPDLTNTLMTRTAIDEADSNDNFGIDLMFYQFPIGDRAQAIIGPIGVDLDDVSTVLSPFAEEGDGTISRFGRRN
PTSFRGPANAALGFSYAFNDMFMVNVAYLTDDPANPAEGAGAFNGAYSALGQLIIEPNDTLAFTLGYVRKYWGKDGVDIT
NGTGSFKAQDPFDGLSTTADNVGLQAHWRVNEKFEIGGWFGSTWARPETSNGDEDDITIINGMLYFAFPDLLIEGNLGGL
MVGVPPIVTDGGDDDSLKDDDTSIHIEAIYRFQINDNISLTPGLFVITNPNHDDVNDTIWISTFRTQFVF

Sequences:

>Translated_550_residues
MKITFNKFVKYAPSVLSITLFIANPAEANRPIQISQAFRSLPIDDPSLEIPSVSELAVEEAIDQVTSVSQLSDVQPTDWA
FQALQSLVERYGCIAGYPNGTYKGNRAMTRFEFAAGLNACLDRITELTAAATSNLVTREDLAILQRLQEEFATELAVLRG
RIDSLEARTAELENNQFSTTTKLNGEILFWLSDTLGERANARGESSGNNKTQTFFSYRTWLHFESSFTGEDLLFTRLQAN
NTYDLSEPDLTNTLMTRTAIDEADSNDNFGIDLMFYQFPIGDRAQAIIGPIGVDLDDVSTVLSPFAEEGDGTISRFGRRN
PTSFRGPANAALGFSYAFNDMFMVNVAYLTDDPANPAEGAGAFNGAYSALGQLIIEPNDTLAFTLGYVRKYWGKDGVDIT
NGTGSFKAQDPFDGLSTTADNVGLQAHWRVNEKFEIGGWFGSTWARPETSNGDEDDITIINGMLYFAFPDLLIEGNLGGL
MVGVPPIVTDGGDDDSLKDDDTSIHIEAIYRFQINDNISLTPGLFVITNPNHDDVNDTIWISTFRTQFVF
>Mature_550_residues
MKITFNKFVKYAPSVLSITLFIANPAEANRPIQISQAFRSLPIDDPSLEIPSVSELAVEEAIDQVTSVSQLSDVQPTDWA
FQALQSLVERYGCIAGYPNGTYKGNRAMTRFEFAAGLNACLDRITELTAAATSNLVTREDLAILQRLQEEFATELAVLRG
RIDSLEARTAELENNQFSTTTKLNGEILFWLSDTLGERANARGESSGNNKTQTFFSYRTWLHFESSFTGEDLLFTRLQAN
NTYDLSEPDLTNTLMTRTAIDEADSNDNFGIDLMFYQFPIGDRAQAIIGPIGVDLDDVSTVLSPFAEEGDGTISRFGRRN
PTSFRGPANAALGFSYAFNDMFMVNVAYLTDDPANPAEGAGAFNGAYSALGQLIIEPNDTLAFTLGYVRKYWGKDGVDIT
NGTGSFKAQDPFDGLSTTADNVGLQAHWRVNEKFEIGGWFGSTWARPETSNGDEDDITIINGMLYFAFPDLLIEGNLGGL
MVGVPPIVTDGGDDDSLKDDDTSIHIEAIYRFQINDNISLTPGLFVITNPNHDDVNDTIWISTFRTQFVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SLH (S-layer homology) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049
- InterPro:   IPR001119 [H]

Pfam domain/function: PF04966 OprB; PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 60558; Mature: 60558

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: PS01072 SLH_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITFNKFVKYAPSVLSITLFIANPAEANRPIQISQAFRSLPIDDPSLEIPSVSELAVEE
CEEEHHHHHHHCCCEEEEEEEEECCCCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHH
AIDQVTSVSQLSDVQPTDWAFQALQSLVERYGCIAGYPNGTYKGNRAMTRFEFAAGLNAC
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEHHHHHHHHHHH
LDRITELTAAATSNLVTREDLAILQRLQEEFATELAVLRGRIDSLEARTAELENNQFSTT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEE
TKLNGEILFWLSDTLGERANARGESSGNNKTQTFFSYRTWLHFESSFTGEDLLFTRLQAN
EEECCEEEEEEECHHCCHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEECC
NTYDLSEPDLTNTLMTRTAIDEADSNDNFGIDLMFYQFPIGDRAQAIIGPIGVDLDDVST
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHEECCCCCCHHHHHH
VLSPFAEEGDGTISRFGRRNPTSFRGPANAALGFSYAFNDMFMVNVAYLTDDPANPAEGA
HHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEEECCCCCCCCCC
GAFNGAYSALGQLIIEPNDTLAFTLGYVRKYWGKDGVDITNGTGSFKAQDPFDGLSTTAD
CCCCHHHHHHCEEEECCCCCEEEHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHH
NVGLQAHWRVNEKFEIGGWFGSTWARPETSNGDEDDITIINGMLYFAFPDLLIEGNLGGL
CCCEEEEEEECCEEEECCEECCCCCCCCCCCCCCCCEEEEECEEEEECCCEEEECCCCEE
MVGVPPIVTDGGDDDSLKDDDTSIHIEAIYRFQINDNISLTPGLFVITNPNHDDVNDTIW
EEECCCEEECCCCCCCCCCCCCEEEEEEEEEEEECCCEEECCCEEEEECCCCCCCCCEEE
ISTFRTQFVF
EEEEEEEECC
>Mature Secondary Structure
MKITFNKFVKYAPSVLSITLFIANPAEANRPIQISQAFRSLPIDDPSLEIPSVSELAVEE
CEEEHHHHHHHCCCEEEEEEEEECCCCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHH
AIDQVTSVSQLSDVQPTDWAFQALQSLVERYGCIAGYPNGTYKGNRAMTRFEFAAGLNAC
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEHHHHHHHHHHH
LDRITELTAAATSNLVTREDLAILQRLQEEFATELAVLRGRIDSLEARTAELENNQFSTT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEE
TKLNGEILFWLSDTLGERANARGESSGNNKTQTFFSYRTWLHFESSFTGEDLLFTRLQAN
EEECCEEEEEEECHHCCHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEECC
NTYDLSEPDLTNTLMTRTAIDEADSNDNFGIDLMFYQFPIGDRAQAIIGPIGVDLDDVST
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHEECCCCCCHHHHHH
VLSPFAEEGDGTISRFGRRNPTSFRGPANAALGFSYAFNDMFMVNVAYLTDDPANPAEGA
HHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEEECCCCCCCCCC
GAFNGAYSALGQLIIEPNDTLAFTLGYVRKYWGKDGVDITNGTGSFKAQDPFDGLSTTAD
CCCCHHHHHHCEEEECCCCCEEEHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHH
NVGLQAHWRVNEKFEIGGWFGSTWARPETSNGDEDDITIINGMLYFAFPDLLIEGNLGGL
CCCEEEEEEECCEEEECCEECCCCCCCCCCCCCCCCEEEEECEEEEECCCEEEECCCCEE
MVGVPPIVTDGGDDDSLKDDDTSIHIEAIYRFQINDNISLTPGLFVITNPNHDDVNDTIW
EEECCCEEECCCCCCCCCCCCCEEEEEEEEEEEECCCEEECCCEEEEECCCCCCCCCEEE
ISTFRTQFVF
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]