| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474605
Identifier: 113474605
GI number: 113474605
Start: 1227168
End: 1228079
Strand: Reverse
Name: 113474605
Synonym: Tery_0766
Alternate gene names: NA
Gene position: 1228079-1227168 (Counterclockwise)
Preceding gene: 113474606
Following gene: 113474601
Centisome position: 15.85
GC content: 34.65
Gene sequence:
>912_bases ATGGCATTTATTAGTCCGAAAACTGATTATGCTTTTAAGAAAATATTTGGTTCTGACCAAAGTCAAGACATATTAATTAG CTTTCTCAATGCGGTTATTTATGATGGAAAAAACCAGATTAAATCTCTAATAATAATTAATCCTTATAATCCCGCTCAGG TACAAACTTTAAAGGATAGTTATTTGGATGTTAGAGCAGTATTGGATGATGATTCTCAGGTGATTATTGAAATGCAGGTA GCTAGTGTTACTGCTTTTGATAAGCGGGTGGTTTATAATTTGGCAAAAACCTATTCTACTCAATTAGGTCCGCGCCAAGG TTACAGGCATTTAAAACCAGTTATTGGGGTGACAATTACGGATTTTGAAATGTTTCCAGAAATAGAGGATGTTGTTAATT CTTTTGCGTTTTTAAATGAGAAAAAGTTCTTTAAATATACAGCGGCAGAAATGCGGTTAGTTTTTGTGGAGTTGCCGAAG TTTAATAAGTCATTGGATGAGTTGGAAAGTTTAGTGGATAAGTGGATTTATTTTATTAAAGAGGCGGACAGTTTGGAGGT TATTCCAGAAATTTTGGGGGAGGTTTCGGTGATAGAAAAAGCTCTCAATATTGCTAATGAAATTAATCTAAGTGTTAAGG AATTAGAGTTGCTAGAACAACGGGCAATTATGGCACAAGATGAGAGTGGGCGTATACTTTTTGCTGAGGAAAAAGGAGAG AAAAAGGGTCGAATTAAAGGGACAATTGCTATGATAATACTTTTACTCAAGGAGCGTTTTGACAAAGTTCCAGAAGATGA AATTGCTACTCAGCTTGATGGTCTATCTTTGGCATATTTGGAGAGTTTAACTAAGGCAGTTTTAAGGTTTAATAATCTTG ATGATTTATCTAATTGGTTGGCAAATAGGTAG
Upstream 100 bases:
>100_bases ATGTAGTACTGTAATATCATCTCCGGTTAAATACGTGTCTTTTGAGTTTATTATATAATAAAACAAGAGGTTTAATAATT AACTAGGGGATGAAATTACT
Downstream 100 bases:
>100_bases GTATCATTTCAGTTATCAATTATTAGTACAATGGTAGGGAGAATTAAAACCTGATTTTATTGATAATAAGTTAGGTTTCT CTATCTGTCATAAATTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MAFISPKTDYAFKKIFGSDQSQDILISFLNAVIYDGKNQIKSLIIINPYNPAQVQTLKDSYLDVRAVLDDDSQVIIEMQV ASVTAFDKRVVYNLAKTYSTQLGPRQGYRHLKPVIGVTITDFEMFPEIEDVVNSFAFLNEKKFFKYTAAEMRLVFVELPK FNKSLDELESLVDKWIYFIKEADSLEVIPEILGEVSVIEKALNIANEINLSVKELELLEQRAIMAQDESGRILFAEEKGE KKGRIKGTIAMIILLLKERFDKVPEDEIATQLDGLSLAYLESLTKAVLRFNNLDDLSNWLANR
Sequences:
>Translated_303_residues MAFISPKTDYAFKKIFGSDQSQDILISFLNAVIYDGKNQIKSLIIINPYNPAQVQTLKDSYLDVRAVLDDDSQVIIEMQV ASVTAFDKRVVYNLAKTYSTQLGPRQGYRHLKPVIGVTITDFEMFPEIEDVVNSFAFLNEKKFFKYTAAEMRLVFVELPK FNKSLDELESLVDKWIYFIKEADSLEVIPEILGEVSVIEKALNIANEINLSVKELELLEQRAIMAQDESGRILFAEEKGE KKGRIKGTIAMIILLLKERFDKVPEDEIATQLDGLSLAYLESLTKAVLRFNNLDDLSNWLANR >Mature_302_residues AFISPKTDYAFKKIFGSDQSQDILISFLNAVIYDGKNQIKSLIIINPYNPAQVQTLKDSYLDVRAVLDDDSQVIIEMQVA SVTAFDKRVVYNLAKTYSTQLGPRQGYRHLKPVIGVTITDFEMFPEIEDVVNSFAFLNEKKFFKYTAAEMRLVFVELPKF NKSLDELESLVDKWIYFIKEADSLEVIPEILGEVSVIEKALNIANEINLSVKELELLEQRAIMAQDESGRILFAEEKGEK KGRIKGTIAMIILLLKERFDKVPEDEIATQLDGLSLAYLESLTKAVLRFNNLDDLSNWLANR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34536; Mature: 34405
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFISPKTDYAFKKIFGSDQSQDILISFLNAVIYDGKNQIKSLIIINPYNPAQVQTLKDS CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHEEEEEEECCCCCHHHHHHHHH YLDVRAVLDDDSQVIIEMQVASVTAFDKRVVYNLAKTYSTQLGPRQGYRHLKPVIGVTIT HHHHHEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCEEEE DFEMFPEIEDVVNSFAFLNEKKFFKYTAAEMRLVFVELPKFNKSLDELESLVDKWIYFIK CHHHCCCHHHHHHHHHHHCCHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHH EADSLEVIPEILGEVSVIEKALNIANEINLSVKELELLEQRAIMAQDESGRILFAEEKGE CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC KKGRIKGTIAMIILLLKERFDKVPEDEIATQLDGLSLAYLESLTKAVLRFNNLDDLSNWL CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH ANR CCC >Mature Secondary Structure AFISPKTDYAFKKIFGSDQSQDILISFLNAVIYDGKNQIKSLIIINPYNPAQVQTLKDS CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHEEEEEEECCCCCHHHHHHHHH YLDVRAVLDDDSQVIIEMQVASVTAFDKRVVYNLAKTYSTQLGPRQGYRHLKPVIGVTIT HHHHHEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCEEEE DFEMFPEIEDVVNSFAFLNEKKFFKYTAAEMRLVFVELPKFNKSLDELESLVDKWIYFIK CHHHCCCHHHHHHHHHHHCCHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHH EADSLEVIPEILGEVSVIEKALNIANEINLSVKELELLEQRAIMAQDESGRILFAEEKGE CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC KKGRIKGTIAMIILLLKERFDKVPEDEIATQLDGLSLAYLESLTKAVLRFNNLDDLSNWL CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH ANR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA