| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is tkt [H]
Identifier: 113474565
GI number: 113474565
Start: 1165895
End: 1167805
Strand: Reverse
Name: tkt [H]
Synonym: Tery_0721
Alternate gene names: 113474565
Gene position: 1167805-1165895 (Counterclockwise)
Preceding gene: 113474566
Following gene: 113474563
Centisome position: 15.07
GC content: 40.76
Gene sequence:
>1911_bases ATGACAACTGCTAGAGCAACATTTCCAATTAACATAGAAAGCTACAAACCTCTTTCTTTGGACCCCACAAATTCCATCCT TACAGATGAACAACGACAAACCCTCAAAGCAAATATTCAACTTTGTCGTGATATGATCGTATTTTTCACTGCCACTGGCG CTGCTAGAGGAGTAGGAGGTCATACCGGTGGCCCTTATGATACAGTGCCGGAAGTCATGATTCTAGATGCTTTTTTCCGA GGTGCAGCAGAAAAGTTTGTACCTATTTTCTTTGATGAGGCTGGACACCGTGTAGCTACCCAATACCTAATGGCGGCTAT ACAAGGAGACCTTCCCGTTGAAAATCTTGTAAATTATCGGGCAGCTAATTCCCATCTACCAGGACATCCAGAACTAGGAC TTACTCCAGGAGTAAAATTTAGTTCCGGAAGATTGGGACATATGTGGCCTTACATCAATGGTGTGGCAATGGCAAATCCT AATAAAGCAGTATTTTGCCTTGGTTCTGATGGTTCTCAACAAGAGGGTAATGATGCTGAAGCGGCGAGAATGGCAGTAGC ACAAAATCTTAATATTAAATTACTCATTGATGATAATGATGTGACTATTGCGGGTCATCCTTCCAACTATTTAAAAGGTT ATGACCTCAATAAAACTCTCACAGGTCACGGTATAAAAGTACTTGAAGGAGATGGAGAAGATTTAGATAGTCTTTACCAA AGAATGTGTCAAGCAGTTACGACAGCCGGTCCGATCGCTATAGTCAATAAGCGGAAAATGTGTGTAGGAATAGAAGGTTT AGAAGGTTCTATCCACGGACATGACGTAATTCCTTTAAAATTAGCGATCGGGTACTTAAAAGATAGAGGAATAACTGAAG CAGTTAAGTATCTTGAAAGTATTGAAAAACCATTACAAAGCTACACTTATTTGGGGGTAAGTGACAAACTTGGTTCCAAC CGCAATGTCTTTGGGGATACTGTGGTATCTATTGTTAGTGGTATGAGTGAAACAGAACGTAGCAACCACTTGTTTATTGA TAGTGACTTAGAAGGTTCCTGCGGACTAAAACAAATTCGTACAGCTTTCCCGGATCGGTTTGTTAGTGGCGGTATTATGG AACGAGGCAACTTTTCTGCTGCTGCGGGATTTGGTATGGAACCAGGTAAGCAAGGTATTTTTGGAACTTTCAGCGCTTTC CTAGAAATGTGCATCTCGGAAATTACAATGGCGCGCTTAAATAAATCTAATATTTTATGCCATTTCTCCCATGCTGGTAT AGATGATATGGCAGATAATACTTGTCATTTCGGTTTAAACAATATGTTTGCTGACAATGGCCTTGATGATGCTTATGAAA CTCGCCTCTACTTCCCAGCAGATGCTAATCAAATGAAAGCTTGCGTTGAGGCAGTGTTTACTCAATCTGGAATGCGGTTT ATTTTTTCTACTCGCTCGAAAGTACCAATTCTGCTTGACAGCAATGGTAAAGACTTTTTTGGCGAAGATTACAAGTTTAT TCCTGGAAAAGATGAGGTGATTCGGGAAGGTACTGCTGGTTATATTGTTAGTTTCGGTGATGCGTTATATCGTTCTCTTG ATGCATTAGAACGTCTGAGGCTCGAAGGAATAGATGTTGGCTTGATTAATAAACCGACTCTCAATGTAATTGACGAGGAG ATGTTGAGAAAGGTAGGTACGGCTCCTTTTGTATTGGTAGTTGAAGCTTTCAATAGGCGTACTGGTTTGGGCAGTCGTTT CGGTTCTTGGTTATTAGAACGTGGTATGAGTCCTAAGTTTGCTTATATTGCTACTCACAAAGAAGGTTGTGGCGGTCTCT GGGAACAGTTTCCTCATCAAGGAATTGGCCCTGAAGGTATTATGAGTAAGGTTAAAGAGTTAGTCAAATAA
Upstream 100 bases:
>100_bases TTTTTTACTTCAGTAACTAGCCCTAAAAATTTTCTGCCTTGTTAAAGGTATGGAATAAATGATGGGAAAATAAATTATAG GTACTTTCCTCTTATTAACT
Downstream 100 bases:
>100_bases TTTTTTTTTAATTATGGTACTACGTCTTTTGGTTAGAACTGGGAAATTAATGTTGTTAAGGAACAGGAAATACCAGAAGC TTTCTAGTGGAATGTAAAAC
Product: transketolase-like
Products: NA
Alternate protein names: TK [H]
Number of amino acids: Translated: 636; Mature: 635
Protein sequence:
>636_residues MTTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGGHTGGPYDTVPEVMILDAFFR GAAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYRAANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANP NKAVFCLGSDGSQQEGNDAEAARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQ RMCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLESIEKPLQSYTYLGVSDKLGSN RNVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIRTAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAF LEMCISEITMARLNKSNILCHFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRF IFSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLRLEGIDVGLINKPTLNVIDEE MLRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKFAYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK
Sequences:
>Translated_636_residues MTTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGGHTGGPYDTVPEVMILDAFFR GAAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYRAANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANP NKAVFCLGSDGSQQEGNDAEAARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQ RMCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLESIEKPLQSYTYLGVSDKLGSN RNVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIRTAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAF LEMCISEITMARLNKSNILCHFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRF IFSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLRLEGIDVGLINKPTLNVIDEE MLRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKFAYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK >Mature_635_residues TTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGGHTGGPYDTVPEVMILDAFFRG AAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYRAANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANPN KAVFCLGSDGSQQEGNDAEAARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQR MCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLESIEKPLQSYTYLGVSDKLGSNR NVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIRTAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAFL EMCISEITMARLNKSNILCHFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRFI FSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLRLEGIDVGLINKPTLNVIDEEM LRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKFAYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=534, Percent_Identity=23.7827715355805, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI4507521, Length=534, Percent_Identity=23.7827715355805, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI133778974, Length=517, Percent_Identity=23.5976789168279, Blast_Score=89, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17539652, Length=492, Percent_Identity=25, Blast_Score=99, Evalue=5e-21, Organism=Saccharomyces cerevisiae, GI6325331, Length=299, Percent_Identity=29.0969899665552, Blast_Score=77, Evalue=6e-15, Organism=Drosophila melanogaster, GI24666278, Length=548, Percent_Identity=24.6350364963504, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI24645119, Length=586, Percent_Identity=24.061433447099, Blast_Score=90, Evalue=5e-18, Organism=Drosophila melanogaster, GI45551847, Length=586, Percent_Identity=24.061433447099, Blast_Score=89, Evalue=7e-18, Organism=Drosophila melanogaster, GI45550715, Length=586, Percent_Identity=24.061433447099, Blast_Score=89, Evalue=7e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 69424; Mature: 69293
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGG CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC HTGGPYDTVPEVMILDAFFRGAAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYR CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHH AANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANPNKAVFCLGSDGSQQEGNDAE HCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHH AARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQ HHHHHHHCCCCEEEEEECCCEEEEECCHHHCCCCCCCCEECCCCEEEEECCCCCHHHHHH RMCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLES HHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHH IEKPLQSYTYLGVSDKLGSNRNVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIR HHHHHHHHEECCCHHCCCCCCCCHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCHHHHH TAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAFLEMCISEITMARLNKSNILC HHCCHHHHCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE HFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRF EECCCCCCHHCCCCEECCCCHHHCCCCCCCHHHCEEEECCCHHHHHHHHHHHHHHCCCEE IFSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLR EEECCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH LEGIDVGLINKPTLNVIDEEMLRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKF HCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCCCCE AYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK EEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHHC >Mature Secondary Structure TTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGG CCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC HTGGPYDTVPEVMILDAFFRGAAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYR CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHH AANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANPNKAVFCLGSDGSQQEGNDAE HCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHH AARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQ HHHHHHHCCCCEEEEEECCCEEEEECCHHHCCCCCCCCEECCCCEEEEECCCCCHHHHHH RMCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLES HHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHH IEKPLQSYTYLGVSDKLGSNRNVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIR HHHHHHHHEECCCHHCCCCCCCCHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCHHHHH TAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAFLEMCISEITMARLNKSNILC HHCCHHHHCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE HFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRF EECCCCCCHHCCCCEECCCCHHHCCCCCCCHHHCEEEECCCHHHHHHHHHHHHHHCCCEE IFSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLR EEECCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH LEGIDVGLINKPTLNVIDEEMLRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKF HCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCCCCE AYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK EEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]