Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is tkt [H]

Identifier: 113474565

GI number: 113474565

Start: 1165895

End: 1167805

Strand: Reverse

Name: tkt [H]

Synonym: Tery_0721

Alternate gene names: 113474565

Gene position: 1167805-1165895 (Counterclockwise)

Preceding gene: 113474566

Following gene: 113474563

Centisome position: 15.07

GC content: 40.76

Gene sequence:

>1911_bases
ATGACAACTGCTAGAGCAACATTTCCAATTAACATAGAAAGCTACAAACCTCTTTCTTTGGACCCCACAAATTCCATCCT
TACAGATGAACAACGACAAACCCTCAAAGCAAATATTCAACTTTGTCGTGATATGATCGTATTTTTCACTGCCACTGGCG
CTGCTAGAGGAGTAGGAGGTCATACCGGTGGCCCTTATGATACAGTGCCGGAAGTCATGATTCTAGATGCTTTTTTCCGA
GGTGCAGCAGAAAAGTTTGTACCTATTTTCTTTGATGAGGCTGGACACCGTGTAGCTACCCAATACCTAATGGCGGCTAT
ACAAGGAGACCTTCCCGTTGAAAATCTTGTAAATTATCGGGCAGCTAATTCCCATCTACCAGGACATCCAGAACTAGGAC
TTACTCCAGGAGTAAAATTTAGTTCCGGAAGATTGGGACATATGTGGCCTTACATCAATGGTGTGGCAATGGCAAATCCT
AATAAAGCAGTATTTTGCCTTGGTTCTGATGGTTCTCAACAAGAGGGTAATGATGCTGAAGCGGCGAGAATGGCAGTAGC
ACAAAATCTTAATATTAAATTACTCATTGATGATAATGATGTGACTATTGCGGGTCATCCTTCCAACTATTTAAAAGGTT
ATGACCTCAATAAAACTCTCACAGGTCACGGTATAAAAGTACTTGAAGGAGATGGAGAAGATTTAGATAGTCTTTACCAA
AGAATGTGTCAAGCAGTTACGACAGCCGGTCCGATCGCTATAGTCAATAAGCGGAAAATGTGTGTAGGAATAGAAGGTTT
AGAAGGTTCTATCCACGGACATGACGTAATTCCTTTAAAATTAGCGATCGGGTACTTAAAAGATAGAGGAATAACTGAAG
CAGTTAAGTATCTTGAAAGTATTGAAAAACCATTACAAAGCTACACTTATTTGGGGGTAAGTGACAAACTTGGTTCCAAC
CGCAATGTCTTTGGGGATACTGTGGTATCTATTGTTAGTGGTATGAGTGAAACAGAACGTAGCAACCACTTGTTTATTGA
TAGTGACTTAGAAGGTTCCTGCGGACTAAAACAAATTCGTACAGCTTTCCCGGATCGGTTTGTTAGTGGCGGTATTATGG
AACGAGGCAACTTTTCTGCTGCTGCGGGATTTGGTATGGAACCAGGTAAGCAAGGTATTTTTGGAACTTTCAGCGCTTTC
CTAGAAATGTGCATCTCGGAAATTACAATGGCGCGCTTAAATAAATCTAATATTTTATGCCATTTCTCCCATGCTGGTAT
AGATGATATGGCAGATAATACTTGTCATTTCGGTTTAAACAATATGTTTGCTGACAATGGCCTTGATGATGCTTATGAAA
CTCGCCTCTACTTCCCAGCAGATGCTAATCAAATGAAAGCTTGCGTTGAGGCAGTGTTTACTCAATCTGGAATGCGGTTT
ATTTTTTCTACTCGCTCGAAAGTACCAATTCTGCTTGACAGCAATGGTAAAGACTTTTTTGGCGAAGATTACAAGTTTAT
TCCTGGAAAAGATGAGGTGATTCGGGAAGGTACTGCTGGTTATATTGTTAGTTTCGGTGATGCGTTATATCGTTCTCTTG
ATGCATTAGAACGTCTGAGGCTCGAAGGAATAGATGTTGGCTTGATTAATAAACCGACTCTCAATGTAATTGACGAGGAG
ATGTTGAGAAAGGTAGGTACGGCTCCTTTTGTATTGGTAGTTGAAGCTTTCAATAGGCGTACTGGTTTGGGCAGTCGTTT
CGGTTCTTGGTTATTAGAACGTGGTATGAGTCCTAAGTTTGCTTATATTGCTACTCACAAAGAAGGTTGTGGCGGTCTCT
GGGAACAGTTTCCTCATCAAGGAATTGGCCCTGAAGGTATTATGAGTAAGGTTAAAGAGTTAGTCAAATAA

Upstream 100 bases:

>100_bases
TTTTTTACTTCAGTAACTAGCCCTAAAAATTTTCTGCCTTGTTAAAGGTATGGAATAAATGATGGGAAAATAAATTATAG
GTACTTTCCTCTTATTAACT

Downstream 100 bases:

>100_bases
TTTTTTTTTAATTATGGTACTACGTCTTTTGGTTAGAACTGGGAAATTAATGTTGTTAAGGAACAGGAAATACCAGAAGC
TTTCTAGTGGAATGTAAAAC

Product: transketolase-like

Products: NA

Alternate protein names: TK [H]

Number of amino acids: Translated: 636; Mature: 635

Protein sequence:

>636_residues
MTTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGGHTGGPYDTVPEVMILDAFFR
GAAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYRAANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANP
NKAVFCLGSDGSQQEGNDAEAARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQ
RMCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLESIEKPLQSYTYLGVSDKLGSN
RNVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIRTAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAF
LEMCISEITMARLNKSNILCHFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRF
IFSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLRLEGIDVGLINKPTLNVIDEE
MLRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKFAYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK

Sequences:

>Translated_636_residues
MTTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGGHTGGPYDTVPEVMILDAFFR
GAAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYRAANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANP
NKAVFCLGSDGSQQEGNDAEAARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQ
RMCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLESIEKPLQSYTYLGVSDKLGSN
RNVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIRTAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAF
LEMCISEITMARLNKSNILCHFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRF
IFSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLRLEGIDVGLINKPTLNVIDEE
MLRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKFAYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK
>Mature_635_residues
TTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGGHTGGPYDTVPEVMILDAFFRG
AAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYRAANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANPN
KAVFCLGSDGSQQEGNDAEAARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQR
MCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLESIEKPLQSYTYLGVSDKLGSNR
NVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIRTAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAFL
EMCISEITMARLNKSNILCHFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRFI
FSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLRLEGIDVGLINKPTLNVIDEEM
LRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKFAYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK

Specific function: Unknown

COG id: COG0021

COG function: function code G; Transketolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transketolase family [H]

Homologues:

Organism=Homo sapiens, GI205277463, Length=534, Percent_Identity=23.7827715355805, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI4507521, Length=534, Percent_Identity=23.7827715355805, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI133778974, Length=517, Percent_Identity=23.5976789168279, Blast_Score=89, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17539652, Length=492, Percent_Identity=25, Blast_Score=99, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6325331, Length=299, Percent_Identity=29.0969899665552, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24666278, Length=548, Percent_Identity=24.6350364963504, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24645119, Length=586, Percent_Identity=24.061433447099, Blast_Score=90, Evalue=5e-18,
Organism=Drosophila melanogaster, GI45551847, Length=586, Percent_Identity=24.061433447099, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI45550715, Length=586, Percent_Identity=24.061433447099, Blast_Score=89, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009014
- InterPro:   IPR015941
- InterPro:   IPR005475
- InterPro:   IPR005478
- InterPro:   IPR005476
- InterPro:   IPR005474 [H]

Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]

EC number: =2.2.1.1 [H]

Molecular weight: Translated: 69424; Mature: 69293

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGG
CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
HTGGPYDTVPEVMILDAFFRGAAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYR
CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHH
AANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANPNKAVFCLGSDGSQQEGNDAE
HCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHH
AARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQ
HHHHHHHCCCCEEEEEECCCEEEEECCHHHCCCCCCCCEECCCCEEEEECCCCCHHHHHH
RMCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLES
HHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHH
IEKPLQSYTYLGVSDKLGSNRNVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIR
HHHHHHHHEECCCHHCCCCCCCCHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCHHHHH
TAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAFLEMCISEITMARLNKSNILC
HHCCHHHHCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
HFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRF
EECCCCCCHHCCCCEECCCCHHHCCCCCCCHHHCEEEECCCHHHHHHHHHHHHHHCCCEE
IFSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLR
EEECCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
LEGIDVGLINKPTLNVIDEEMLRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKF
HCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCCCCE
AYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK
EEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHHC
>Mature Secondary Structure 
TTARATFPINIESYKPLSLDPTNSILTDEQRQTLKANIQLCRDMIVFFTATGAARGVGG
CCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
HTGGPYDTVPEVMILDAFFRGAAEKFVPIFFDEAGHRVATQYLMAAIQGDLPVENLVNYR
CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHH
AANSHLPGHPELGLTPGVKFSSGRLGHMWPYINGVAMANPNKAVFCLGSDGSQQEGNDAE
HCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHH
AARMAVAQNLNIKLLIDDNDVTIAGHPSNYLKGYDLNKTLTGHGIKVLEGDGEDLDSLYQ
HHHHHHHCCCCEEEEEECCCEEEEECCHHHCCCCCCCCEECCCCEEEEECCCCCHHHHHH
RMCQAVTTAGPIAIVNKRKMCVGIEGLEGSIHGHDVIPLKLAIGYLKDRGITEAVKYLES
HHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHH
IEKPLQSYTYLGVSDKLGSNRNVFGDTVVSIVSGMSETERSNHLFIDSDLEGSCGLKQIR
HHHHHHHHEECCCHHCCCCCCCCHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCHHHHH
TAFPDRFVSGGIMERGNFSAAAGFGMEPGKQGIFGTFSAFLEMCISEITMARLNKSNILC
HHCCHHHHCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
HFSHAGIDDMADNTCHFGLNNMFADNGLDDAYETRLYFPADANQMKACVEAVFTQSGMRF
EECCCCCCHHCCCCEECCCCHHHCCCCCCCHHHCEEEECCCHHHHHHHHHHHHHHCCCEE
IFSTRSKVPILLDSNGKDFFGEDYKFIPGKDEVIREGTAGYIVSFGDALYRSLDALERLR
EEECCCCCEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
LEGIDVGLINKPTLNVIDEEMLRKVGTAPFVLVVEAFNRRTGLGSRFGSWLLERGMSPKF
HCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCCCCE
AYIATHKEGCGGLWEQFPHQGIGPEGIMSKVKELVK
EEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]