Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474451
Identifier: 113474451
GI number: 113474451
Start: 955607
End: 957274
Strand: Reverse
Name: 113474451
Synonym: Tery_0595
Alternate gene names: NA
Gene position: 957274-955607 (Counterclockwise)
Preceding gene: 113474452
Following gene: 113474450
Centisome position: 12.35
GC content: 37.05
Gene sequence:
>1668_bases ATGAAAAAGCAAGATAAAATCTTACCTTTAACCATAATAGGATCAGCCATATTAATAATTGTCGGTAGTGTCACCGCCTA CATGGGAATGTATAGGAAAGAAACAGTTAAAAATTTACCTGTGGGTGCTGAGGTTCTCCCCCAGGATACAATGATAACTT TACATGTTTCTACTGACTATAATCAATGGAAAAAATTACAAGAGTTTGGTACTTCTGAGTCAAAAACTGCTTTCCAAAAG TTTTTAGGGAATTTGCGCGATCGCTTCCTAACTACTTATGGTTATAATTATCAACGAGATATTAAACCTTGGGTAGGCAA GGAAGTAGCGATCGCTTTCTTACGCCAATCTACTCTTGAACCCAGTAACGAAAATATCCCCGGTTCTTCACCACCCCCTC CGGCTCAACAAGCAACTATGGTGGTATTGCCGATCGCTGATCCAATTGCAGCTAAAAAAATTTTAGATAAACCGCCCTCT CTTAATGAAGGTAAATTAGTTAAACGTACCTACAGAGGTATTGAAATTACAGAAACTCAAGAAGTAGCTAGCCAAGATTT TTCTGTAGCAGCATTGGGAGAAAAATTTTTGGTGGTTACTAATTCTCCAAGGGCAATAAACCGAGTGGTTGATATATATA AAGGAGACAATTCTCTAGAAAAAGCTCCGGGTTTAACTCAAGCAATTAATAAATTGGAAACTGCTCCATCTTTTGCTAAG GTATATGTGAATATCCCTGCTGCTGCTGCTTATACCTCTAGTAAATCTGTTACTTCTCTTTCTGAGGAAAATCTCAGACA ATTTGAGGATAACCAGGGAATAGCAGCAACTTTAAACTTAGTTCCTGAAGGTATAAATTTAAAAGCAGTTTCTTGGCTTA AACCTAATAGCCAGAAAAAGTTTACTGTAGAAAATAATGCTACAGAAATGTTAGATAAGGTTCCTGGAAATGCTTTAATG ATGCTATCTGGCAGTAATTTACAGCGAATGTGGTCTGATTATGTTAAGGGTGCAGTGGCTAATCCCTTAGCACCTATTAA CCCAGAGACATTACGTCAAAACATGAAAAATGCAACTGGCATGGATTTAGATAAGGAATTTATCAACTGGATGGGAGCAG AGTATTCTCTATCTTTACTGCCTGTTTCTAAAGATAAGAAGCAGTTACAAAAATTTTTTGCGGGGTTTGTGTTTATGGTT AAGGCAAGCGATCGCCGTGTAGCTGAAGACTCTCTGAAAAAATTAGATCAAGTGATGAAGAGGAATAAATTTCAGGTAGG TGAAGCTATTGCTAGGGGAAGACCTGTGGTAAAATGGACTTCTCCATTTGGTGGGTTTACTGTAGTTCGTGGTTGGTTGA ATGGGAATGTAGTATTTTTCACTTTAGGAGGATCTGTGGAAAATCAAATATTGCCTGCTCCGACAAATTCTATGGCGGAA AGTGTATTTTTACAAAAAACCCTCCCATTAGAGAGAGAAGCTTGGAATGGTAATTTTTTCATTGATATTAGTCGGACTTT CAGCAAAAAAAATCTTTCTCTTCCCCAGTTACCTGCTAATCAAAAAATTTGGGTAGATGGTATTGAGTCTATTGGAGTAA CATCTATTATCCTTAATAATCGCACAACTAATTATGATGTGTTTGTGAAATTGAAAAAACAAAAGTAG
Upstream 100 bases:
>100_bases TTTTGGACTTTTACCTTGCCCATAGCCCTTGTTTGGTAAAAATATTAAATATTATTATCTTTATGCCAACTTCTAATCCC TAATTTCTACTTAGCTAAGA
Downstream 100 bases:
>100_bases CTATAGCTTTATGAGGAAGTCAGATTTTTCTTCTGACTGTACCTCCGCAATCCAATTTTTCCTCTAAGACAATTCTCAAA AACTTTCCTCGACTTGGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 555; Mature: 555
Protein sequence:
>555_residues MKKQDKILPLTIIGSAILIIVGSVTAYMGMYRKETVKNLPVGAEVLPQDTMITLHVSTDYNQWKKLQEFGTSESKTAFQK FLGNLRDRFLTTYGYNYQRDIKPWVGKEVAIAFLRQSTLEPSNENIPGSSPPPPAQQATMVVLPIADPIAAKKILDKPPS LNEGKLVKRTYRGIEITETQEVASQDFSVAALGEKFLVVTNSPRAINRVVDIYKGDNSLEKAPGLTQAINKLETAPSFAK VYVNIPAAAAYTSSKSVTSLSEENLRQFEDNQGIAATLNLVPEGINLKAVSWLKPNSQKKFTVENNATEMLDKVPGNALM MLSGSNLQRMWSDYVKGAVANPLAPINPETLRQNMKNATGMDLDKEFINWMGAEYSLSLLPVSKDKKQLQKFFAGFVFMV KASDRRVAEDSLKKLDQVMKRNKFQVGEAIARGRPVVKWTSPFGGFTVVRGWLNGNVVFFTLGGSVENQILPAPTNSMAE SVFLQKTLPLEREAWNGNFFIDISRTFSKKNLSLPQLPANQKIWVDGIESIGVTSIILNNRTTNYDVFVKLKKQK
Sequences:
>Translated_555_residues MKKQDKILPLTIIGSAILIIVGSVTAYMGMYRKETVKNLPVGAEVLPQDTMITLHVSTDYNQWKKLQEFGTSESKTAFQK FLGNLRDRFLTTYGYNYQRDIKPWVGKEVAIAFLRQSTLEPSNENIPGSSPPPPAQQATMVVLPIADPIAAKKILDKPPS LNEGKLVKRTYRGIEITETQEVASQDFSVAALGEKFLVVTNSPRAINRVVDIYKGDNSLEKAPGLTQAINKLETAPSFAK VYVNIPAAAAYTSSKSVTSLSEENLRQFEDNQGIAATLNLVPEGINLKAVSWLKPNSQKKFTVENNATEMLDKVPGNALM MLSGSNLQRMWSDYVKGAVANPLAPINPETLRQNMKNATGMDLDKEFINWMGAEYSLSLLPVSKDKKQLQKFFAGFVFMV KASDRRVAEDSLKKLDQVMKRNKFQVGEAIARGRPVVKWTSPFGGFTVVRGWLNGNVVFFTLGGSVENQILPAPTNSMAE SVFLQKTLPLEREAWNGNFFIDISRTFSKKNLSLPQLPANQKIWVDGIESIGVTSIILNNRTTNYDVFVKLKKQK >Mature_555_residues MKKQDKILPLTIIGSAILIIVGSVTAYMGMYRKETVKNLPVGAEVLPQDTMITLHVSTDYNQWKKLQEFGTSESKTAFQK FLGNLRDRFLTTYGYNYQRDIKPWVGKEVAIAFLRQSTLEPSNENIPGSSPPPPAQQATMVVLPIADPIAAKKILDKPPS LNEGKLVKRTYRGIEITETQEVASQDFSVAALGEKFLVVTNSPRAINRVVDIYKGDNSLEKAPGLTQAINKLETAPSFAK VYVNIPAAAAYTSSKSVTSLSEENLRQFEDNQGIAATLNLVPEGINLKAVSWLKPNSQKKFTVENNATEMLDKVPGNALM MLSGSNLQRMWSDYVKGAVANPLAPINPETLRQNMKNATGMDLDKEFINWMGAEYSLSLLPVSKDKKQLQKFFAGFVFMV KASDRRVAEDSLKKLDQVMKRNKFQVGEAIARGRPVVKWTSPFGGFTVVRGWLNGNVVFFTLGGSVENQILPAPTNSMAE SVFLQKTLPLEREAWNGNFFIDISRTFSKKNLSLPQLPANQKIWVDGIESIGVTSIILNNRTTNYDVFVKLKKQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61669; Mature: 61669
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQDKILPLTIIGSAILIIVGSVTAYMGMYRKETVKNLPVGAEVLPQDTMITLHVSTDY CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEEEECCH NQWKKLQEFGTSESKTAFQKFLGNLRDRFLTTYGYNYQRDIKPWVGKEVAIAFLRQSTLE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC PSNENIPGSSPPPPAQQATMVVLPIADPIAAKKILDKPPSLNEGKLVKRTYRGIEITETQ CCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHCCCEEECHH EVASQDFSVAALGEKFLVVTNSPRAINRVVDIYKGDNSLEKAPGLTQAINKLETAPSFAK HHHHCCCEEEECCCEEEEEECCCHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCEEE VYVNIPAAAAYTSSKSVTSLSEENLRQFEDNQGIAATLNLVPEGINLKAVSWLKPNSQKK EEEECCCHHEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCCE FTVENNATEMLDKVPGNALMMLSGSNLQRMWSDYVKGAVANPLAPINPETLRQNMKNATG EEECCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHCCCC MDLDKEFINWMGAEYSLSLLPVSKDKKQLQKFFAGFVFMVKASDRRVAEDSLKKLDQVMK CCCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHH RNKFQVGEAIARGRPVVKWTSPFGGFTVVRGWLNGNVVFFTLGGSVENQILPAPTNSMAE CCCHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCEECCCCHHHHH SVFLQKTLPLEREAWNGNFFIDISRTFSKKNLSLPQLPANQKIWVDGIESIGVTSIILNN HHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECC RTTNYDVFVKLKKQK CCCCEEEEEEEECCC >Mature Secondary Structure MKKQDKILPLTIIGSAILIIVGSVTAYMGMYRKETVKNLPVGAEVLPQDTMITLHVSTDY CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEEEECCH NQWKKLQEFGTSESKTAFQKFLGNLRDRFLTTYGYNYQRDIKPWVGKEVAIAFLRQSTLE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC PSNENIPGSSPPPPAQQATMVVLPIADPIAAKKILDKPPSLNEGKLVKRTYRGIEITETQ CCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHCCCEEECHH EVASQDFSVAALGEKFLVVTNSPRAINRVVDIYKGDNSLEKAPGLTQAINKLETAPSFAK HHHHCCCEEEECCCEEEEEECCCHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCEEE VYVNIPAAAAYTSSKSVTSLSEENLRQFEDNQGIAATLNLVPEGINLKAVSWLKPNSQKK EEEECCCHHEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCCE FTVENNATEMLDKVPGNALMMLSGSNLQRMWSDYVKGAVANPLAPINPETLRQNMKNATG EEECCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHCCCC MDLDKEFINWMGAEYSLSLLPVSKDKKQLQKFFAGFVFMVKASDRRVAEDSLKKLDQVMK CCCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHH RNKFQVGEAIARGRPVVKWTSPFGGFTVVRGWLNGNVVFFTLGGSVENQILPAPTNSMAE CCCHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCEECCCCHHHHH SVFLQKTLPLEREAWNGNFFIDISRTFSKKNLSLPQLPANQKIWVDGIESIGVTSIILNN HHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECC RTTNYDVFVKLKKQK CCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA