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The map label for this gene is ycf4

Identifier: 113474379

GI number: 113474379

Start: 815307

End: 815870

Strand: Reverse

Name: ycf4

Synonym: Tery_0512

Alternate gene names: 113474379

Gene position: 815870-815307 (Counterclockwise)

Preceding gene: 113474386

Following gene: 113474378

Centisome position: 10.53

GC content: 39.89

Gene sequence:

>564_bases
ATGACTACTCAAACTTCGACTGGCGATCGCTTAGTACATCAAGAAATTATTGGTTCTCGTCGTCTTAGCAATTACTTATG
GGCCATAATTGTGACCATGGGAGGTATCGGCTTTCTTTTATCAGGAATCTCAAGCTATTTAAAAGTTAACTTATTAATTG
TTGCCGACCCTACCCAACTCAACTTCTTACCCCAGGGAATAGCTATGAGTTTTTATGGCCTGCTTGGTACTATATATGGA
ATATTTTTGTGGTTAACAGTGATTTGGGATCTTGGCGGTGGTTACAATGACTTTAACCAAGAGAGTGGCCAGATTATGAT
TTTTCGCCGGGGATTTCCTGGTAAGAACCGTAAAGTAGAATTTAATTGTACTACTGAAAATGTCCAATCTATTAAAGTAG
ATATTAAGGAAGGCCTTAATCCTCGTAGAGCTATATATCTCTGCCTCAAAGATCGTCGGCAAATACCCCTTACCCGTGTA
GGTCAGCCATTGGCCTTATCAAAATTAGAGAATGAAGCTGCTCAACTTGCAAAGTTTCTGCAAGTTCCTTTGGAGGGGTT
ATAG

Upstream 100 bases:

>100_bases
TGTTAATTCATCTCTAGTACTGCTGAGTGATTATGGCATAAGATTAATCGACACTCTAGCTAAAAAAAATTAAACTTGAG
AAAAATATTATGGAAGGTTT

Downstream 100 bases:

>100_bases
GGAGATAGGGAGATAGAAAGATGTTATGAGAGAGGACTTGACAGTTCAATAAAAATTCACTATAGTTACCTAAACTTATA
CAGATATATGGATAATCTAG

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTTQTSTGDRLVHQEIIGSRRLSNYLWAIIVTMGGIGFLLSGISSYLKVNLLIVADPTQLNFLPQGIAMSFYGLLGTIYG
IFLWLTVIWDLGGGYNDFNQESGQIMIFRRGFPGKNRKVEFNCTTENVQSIKVDIKEGLNPRRAIYLCLKDRRQIPLTRV
GQPLALSKLENEAAQLAKFLQVPLEGL

Sequences:

>Translated_187_residues
MTTQTSTGDRLVHQEIIGSRRLSNYLWAIIVTMGGIGFLLSGISSYLKVNLLIVADPTQLNFLPQGIAMSFYGLLGTIYG
IFLWLTVIWDLGGGYNDFNQESGQIMIFRRGFPGKNRKVEFNCTTENVQSIKVDIKEGLNPRRAIYLCLKDRRQIPLTRV
GQPLALSKLENEAAQLAKFLQVPLEGL
>Mature_186_residues
TTQTSTGDRLVHQEIIGSRRLSNYLWAIIVTMGGIGFLLSGISSYLKVNLLIVADPTQLNFLPQGIAMSFYGLLGTIYGI
FLWLTVIWDLGGGYNDFNQESGQIMIFRRGFPGKNRKVEFNCTTENVQSIKVDIKEGLNPRRAIYLCLKDRRQIPLTRVG
QPLALSKLENEAAQLAKFLQVPLEGL

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF4_TRIEI (Q118V7)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720440.1
- STRING:   Q118V7
- GeneID:   4242360
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0512
- NMPDR:   fig|203124.1.peg.4506
- eggNOG:   NOG06447
- HOGENOM:   HBG439339
- OMA:   LTRVGQP
- ProtClustDB:   PRK02542
- BioCyc:   TERY203124:TERY_0512-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_00437
- InterPro:   IPR003359
- ProDom:   PD003698

Pfam domain/function: PF02392 Ycf4

EC number: NA

Molecular weight: Translated: 20939; Mature: 20808

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14013fd8)-; HASH(0x15157f3c)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQTSTGDRLVHQEIIGSRRLSNYLWAIIVTMGGIGFLLSGISSYLKVNLLIVADPTQL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEEEECCCCC
NFLPQGIAMSFYGLLGTIYGIFLWLTVIWDLGGGYNDFNQESGQIMIFRRGFPGKNRKVE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEE
FNCTTENVQSIKVDIKEGLNPRRAIYLCLKDRRQIPLTRVGQPLALSKLENEAAQLAKFL
EEECCCCHHHEEEEHHHCCCHHHEEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
QVPLEGL
HCCCCCH
>Mature Secondary Structure 
TTQTSTGDRLVHQEIIGSRRLSNYLWAIIVTMGGIGFLLSGISSYLKVNLLIVADPTQL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEEEECCCCC
NFLPQGIAMSFYGLLGTIYGIFLWLTVIWDLGGGYNDFNQESGQIMIFRRGFPGKNRKVE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEE
FNCTTENVQSIKVDIKEGLNPRRAIYLCLKDRRQIPLTRVGQPLALSKLENEAAQLAKFL
EEECCCCHHHEEEEHHHCCCHHHEEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
QVPLEGL
HCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA