| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is amsG [H]
Identifier: 113474357
GI number: 113474357
Start: 783486
End: 784217
Strand: Direct
Name: amsG [H]
Synonym: Tery_0489
Alternate gene names: 113474357
Gene position: 783486-784217 (Clockwise)
Preceding gene: 113474356
Following gene: 113474358
Centisome position: 10.11
GC content: 34.43
Gene sequence:
>732_bases ATGACTGCCGATAGCCAATTCATCTCTGGTAAAGTAATTAGAGGATTTACAGGGCGAGCTTTTCAGCCTTTCCTCCCCAG AGATAAACACAAAAGTCAAATTCATCAAGTCCTAGAAATAGGATTTTCCAAACGATTATTCGATATCCTGTTTTCTCTAT CTGTTCTCATATTGTTTTCCCCTGTTTACGTCCTGATAGCTTTGCTAATTGCATTCAGTTCACCAGGTTCAATCTTTTAT GTTCAAGAAAGAGTAGGTAAAAATAGAAAGCTATTCCGTTGTTTAAAATTTAGAACCATGGTGCAAAATGCAGATGAAGT GTTAGGAGAAATTATGGAAACTTGTCCTGATCTACGTCAAGAATTTCAAGATAGTTTTAAATTAAAACATGACCCTAGAA TTACATGGATCGGTAGATTTCTAAGAATTACAAGTTTAGATGAATTTCCTCAATTTTGGAACGTTTTGAAAGGTGACATG AGTGTAGTAGGCCCGAGACCATTAGTCCTTGAAGAACTAGCAAAATATGGTCATCACATGGATAAAATTCTTACCATTAA ACCAGGAATAACTGGTTTGTGGCAAGTTTCTGGTCGCAATGATATTCCTTATCCTAAGAGAGTTCAAATAGATCTTTACT ATGTAAATTTCCGAAATTTTTGGATAGATATATGGATCATGTTTAAAACTATTGGTATTGTTATTTTTCCAAAAAACAAC GGTGCTTACTAA
Upstream 100 bases:
>100_bases TGGTCCAAAATTAGTTTTATTTTTCATAACCAAAGTTGCCCTCTATTTCTCTATAGGCTTTATGATCATGACTGTGTGTG GTGTGAAGTGAAGGAGTAAG
Downstream 100 bases:
>100_bases TCCTGAATCATTAGGACTAAGAGATTTCAAATTATCTTAAACTATTGTAGGGTTAGAGGTTGGTGATATTTTTACAAATA TTGAACCTCTAACCCAAATT
Product: undecaprenyl-phosphate galactosephosphotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MTADSQFISGKVIRGFTGRAFQPFLPRDKHKSQIHQVLEIGFSKRLFDILFSLSVLILFSPVYVLIALLIAFSSPGSIFY VQERVGKNRKLFRCLKFRTMVQNADEVLGEIMETCPDLRQEFQDSFKLKHDPRITWIGRFLRITSLDEFPQFWNVLKGDM SVVGPRPLVLEELAKYGHHMDKILTIKPGITGLWQVSGRNDIPYPKRVQIDLYYVNFRNFWIDIWIMFKTIGIVIFPKNN GAY
Sequences:
>Translated_243_residues MTADSQFISGKVIRGFTGRAFQPFLPRDKHKSQIHQVLEIGFSKRLFDILFSLSVLILFSPVYVLIALLIAFSSPGSIFY VQERVGKNRKLFRCLKFRTMVQNADEVLGEIMETCPDLRQEFQDSFKLKHDPRITWIGRFLRITSLDEFPQFWNVLKGDM SVVGPRPLVLEELAKYGHHMDKILTIKPGITGLWQVSGRNDIPYPKRVQIDLYYVNFRNFWIDIWIMFKTIGIVIFPKNN GAY >Mature_242_residues TADSQFISGKVIRGFTGRAFQPFLPRDKHKSQIHQVLEIGFSKRLFDILFSLSVLILFSPVYVLIALLIAFSSPGSIFYV QERVGKNRKLFRCLKFRTMVQNADEVLGEIMETCPDLRQEFQDSFKLKHDPRITWIGRFLRITSLDEFPQFWNVLKGDMS VVGPRPLVLEELAKYGHHMDKILTIKPGITGLWQVSGRNDIPYPKRVQIDLYYVNFRNFWIDIWIMFKTIGIVIFPKNNG AY
Specific function: Involved in the biosynthesis of amylovoran which functions as a virulence factor. May act as a sugar transferase and may be involved in the export of the repeating unit by flipping the lipid carrier to the periplasmic face of the inner membrane [H]
COG id: COG2148
COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial sugar transferase family [H]
Homologues:
Organism=Escherichia coli, GI1788360, Length=196, Percent_Identity=39.2857142857143, Blast_Score=122, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003362 - InterPro: IPR017475 - InterPro: IPR017472 [H]
Pfam domain/function: PF02397 Bac_transf [H]
EC number: NA
Molecular weight: Translated: 28311; Mature: 28179
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADSQFISGKVIRGFTGRAFQPFLPRDKHKSQIHQVLEIGFSKRLFDILFSLSVLILFS CCCCCCHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVYVLIALLIAFSSPGSIFYVQERVGKNRKLFRCLKFRTMVQNADEVLGEIMETCPDLRQ HHHHHHHHHHHHCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EFQDSFKLKHDPRITWIGRFLRITSLDEFPQFWNVLKGDMSVVGPRPLVLEELAKYGHHM HHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCHH DKILTIKPGITGLWQVSGRNDIPYPKRVQIDLYYVNFRNFWIDIWIMFKTIGIVIFPKNN HHEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHCEEEEECCC GAY CCC >Mature Secondary Structure TADSQFISGKVIRGFTGRAFQPFLPRDKHKSQIHQVLEIGFSKRLFDILFSLSVLILFS CCCCCHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVYVLIALLIAFSSPGSIFYVQERVGKNRKLFRCLKFRTMVQNADEVLGEIMETCPDLRQ HHHHHHHHHHHHCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EFQDSFKLKHDPRITWIGRFLRITSLDEFPQFWNVLKGDMSVVGPRPLVLEELAKYGHHM HHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCHH DKILTIKPGITGLWQVSGRNDIPYPKRVQIDLYYVNFRNFWIDIWIMFKTIGIVIFPKNN HHEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHCEEEEECCC GAY CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7596293 [H]