| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is lon2 [H]
Identifier: 113474346
GI number: 113474346
Start: 757621
End: 758259
Strand: Direct
Name: lon2 [H]
Synonym: Tery_0478
Alternate gene names: 113474346
Gene position: 757621-758259 (Clockwise)
Preceding gene: 113474345
Following gene: 113474348
Centisome position: 9.78
GC content: 38.03
Gene sequence:
>639_bases ATGGCATCCTCTTCTGTAGCTGTTCGAGAACTTCCCCTATTTCCCTTACCAGAAGTAGTATTATTTCCGGGTAGGCCATT ACCACTATATATCTTTGAATTTCGCTATAGAATTATGATGAATACAATTCTAGAGAGTGATAGTAGATTTGGAGTTATGA TGTGGGACTCAACCCAAGATCGAGTTGTGGCAACTGGATGCTGCGCTAGAATTGAGGATTATCAGCGTTTACCTGATGAT CGAATGAAGATTTTAACTATAGGTGAGAAGAGATTTAGAGTTTTAGATACGGTTAGAGAAAAACCGTATTTAGTTGGTTT AGTTGAATGGATAGAAGATGCTCCTTCTGAAAAGGAGCTTAGAGAGTTAACAACAAAAGTTGATCTCTTACTGAAAGATG TAGTTCATCTTTCGGGAAAATTGATGGATCAGAGGATAGAGCTACCAGAAGATATTCCTAATTTACCTAAAGAATTATCC TACTGGGTAGCTAGTAATCTTTATGGTGTGGCGACAGAACAGCAAGCTCTTTTGGAGATGCAAGATACTGGTGCTAGACT AGAAAGAGAAGTAGAAATTCTCACTTCTACCCGCAATCATCTTGCAGCTAGAACTGTTCTTAAGGATACTTTAAATTGA
Upstream 100 bases:
>100_bases AATCTCAAAATTATCAAAAATATTAAGTATATATATATCCAAGGATAGAAAAATCCGCTTATAATAAGTCTAATTACTAA GACTCTATTAAAACTGGAAA
Downstream 100 bases:
>100_bases CATTCTCTCAAAGTTACTTACTCTCAAAGTTGCTTAACTGCAAAACCTAATGTTTTTTTTGATTGGACATCATCTCAATG CTGCTCTATGAGACAGCATT
Product: peptidase S16, lon-like
Products: NA
Alternate protein names: ATP-dependent protease La 2 [H]
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MASSSVAVRELPLFPLPEVVLFPGRPLPLYIFEFRYRIMMNTILESDSRFGVMMWDSTQDRVVATGCCARIEDYQRLPDD RMKILTIGEKRFRVLDTVREKPYLVGLVEWIEDAPSEKELRELTTKVDLLLKDVVHLSGKLMDQRIELPEDIPNLPKELS YWVASNLYGVATEQQALLEMQDTGARLEREVEILTSTRNHLAARTVLKDTLN
Sequences:
>Translated_212_residues MASSSVAVRELPLFPLPEVVLFPGRPLPLYIFEFRYRIMMNTILESDSRFGVMMWDSTQDRVVATGCCARIEDYQRLPDD RMKILTIGEKRFRVLDTVREKPYLVGLVEWIEDAPSEKELRELTTKVDLLLKDVVHLSGKLMDQRIELPEDIPNLPKELS YWVASNLYGVATEQQALLEMQDTGARLEREVEILTSTRNHLAARTVLKDTLN >Mature_211_residues ASSSVAVRELPLFPLPEVVLFPGRPLPLYIFEFRYRIMMNTILESDSRFGVMMWDSTQDRVVATGCCARIEDYQRLPDDR MKILTIGEKRFRVLDTVREKPYLVGLVEWIEDAPSEKELRELTTKVDLLLKDVVHLSGKLMDQRIELPEDIPNLPKELSY WVASNLYGVATEQQALLEMQDTGARLEREVEILTSTRNHLAARTVLKDTLN
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG2802
COG function: function code R; Uncharacterized protein, similar to the N-terminal domain of Lon protease
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI87080813, Length=212, Percent_Identity=29.7169811320755, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI148528975, Length=204, Percent_Identity=28.921568627451, Blast_Score=67, Evalue=9e-12,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 24454; Mature: 24323
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSSVAVRELPLFPLPEVVLFPGRPLPLYIFEFRYRIMMNTILESDSRFGVMMWDSTQD CCCCCCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC RVVATGCCARIEDYQRLPDDRMKILTIGEKRFRVLDTVREKPYLVGLVEWIEDAPSEKEL CEEHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH RELTTKVDLLLKDVVHLSGKLMDQRIELPEDIPNLPKELSYWVASNLYGVATEQQALLEM HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH QDTGARLEREVEILTSTRNHLAARTVLKDTLN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ASSSVAVRELPLFPLPEVVLFPGRPLPLYIFEFRYRIMMNTILESDSRFGVMMWDSTQD CCCCCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC RVVATGCCARIEDYQRLPDDRMKILTIGEKRFRVLDTVREKPYLVGLVEWIEDAPSEKEL CEEHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH RELTTKVDLLLKDVVHLSGKLMDQRIELPEDIPNLPKELSYWVASNLYGVATEQQALLEM HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH QDTGARLEREVEILTSTRNHLAARTVLKDTLN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8331083; 8331082 [H]