Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474292

Identifier: 113474292

GI number: 113474292

Start: 654900

End: 656402

Strand: Direct

Name: 113474292

Synonym: Tery_0417

Alternate gene names: NA

Gene position: 654900-656402 (Clockwise)

Preceding gene: 161485632

Following gene: 113474293

Centisome position: 8.45

GC content: 37.72

Gene sequence:

>1503_bases
ATGTATACAACATCCGAAAATACGACTACAATAATAGTAGCTTTAATTGCTATGGGAATTCTGGGCTGGGGATACTACAG
GGCTAGGCCTTATGGAAAAACTGGCATTTTAGGTTGGTTACAATCAGTAGTATTAATGACACCTTGGCTAGTGTTTTTTG
TTCTATTTGCTGCGGGAATTTATCTGAATTTAGTATTGATTCTATTTATGTTAGTGGCTTGTACAGGATTGTACATCTAT
TTGGGTTGGCAATTACGAATAATAGCAGCTCAAGAAACAGAAAATAAACCTGATATTAAACCTATTAGTAACTCCTTACA
AGAGTCTTCTAGTGAAGAGAAAACTGAATTAGTAAATAGGGAAGAGAAAAAAGAAGAAACTCTAGAATTTCTTCCTATTT
CCACTGAAGACTTACAAAAAGTAAAAGACATTTTTGGTATTGATACCTTTTTTATTACCGAAACTATCCCCTATCAAGAA
GGAGCTATTTTCAAGGGTAATTTACGGGGAGATATAGAAAAGGTTTATACTAAATTATCAGCAAAATTGGCCGAAAAACT
TGGCGATCGCTACAGACTATTTTTATTGGAAAGTCCAGAAGCTAAACCAGTAGTAATTCTTTTACCAAGCAAAAATGACC
CATTACCTGCCACTACATCCCAAAAAATTCTGGCAGTTATTCTATTACTTGCGACTATTGCCACCAGTTTTGAAGCGGGT
GGGTTATTGTTGGGGTTTGACTTTTTCAACCAACCCATGAGATATCAAGAAGCATTACCCATTGTAATTGGTCTGTGGAT
AGTTTTGGGTGGTCACGAAATTGCTCACCAAGTTTTAGCAAAACTTCACAATGTTCGCTTTAGTTGGCCGTTTTTTCTGC
CCGCTTGGCAAATTGGTAGTTTTGGTTCGGTTAACCGTTTCGAGTCAATACTCCCTAACCGAAAAGTTCTATTTGATGTG
GCTTTTGCCGGACCTGCTGTTGGAGGAATAATTTCTTTGGCAATGCTATTAGGGGGTTTGTTACTTTCCCATGAAGGTAG
TCTGTTTCAGATGCCATCAGAATTTTTTAAAGCTTCTGTTTTGGTAGGAACTTTAGCACGGGTGATTTTAGGTCCGGCAG
TACATCAGAGTATAGTAGATATTCACCCACTAGCAATTATAGGTTGGTTGGGTTTAGTTATTACAGCAATTAATCTGATG
CCAGCAGGTCAGTTAGATGGTGGTAGAATTCTGCAAGCAATTTATGGTCGGAAAGTGGCAGGTAGAGCAACATTATTTAC
TTTTATAGTATTGGTATTTGCTTCTTTGGTTAATCCTTTGGCGTTGTATTGGGCGATTATTATTTTGGTATTACAGCGAA
ATTTAGAACGGCCTTGTTTAAATGAATTGGTAGAACCGGATGATGGTCGGGCAGGTTTGTGTTTGTTGGCTTTATTTTTT
GCGATCGCTACTTTGTTTCCTCTAACTCCAGGTTTAGCTGGTAGGTTGGGTATTGGTAGTTAA

Upstream 100 bases:

>100_bases
AAACAAGGAAGCTATTTATTTCGAGAATAAAATAATTTTTCTATATATCTATAGGAAAACTATTACTTTTGACTTTTAAC
TTTATACTCTCATATAGATT

Downstream 100 bases:

>100_bases
TCTTGGGCTTACACAAGTCAAAAGTTAACCCTCCCCTACTCTTTTAGGGGGGGCTGTTTCTTTCTAAAATTTGTTGTCTA
TTGAAGGTTTAGAAAAAAAT

Product: peptidase M50

Products: NA

Alternate protein names: Peptidase; M50 Family Peptidase; Membrane-Associated Zn-Dependent Protease; Metalloprotease; Zinc Metalloprotease; M50B Family Peptidase; Membrane-Associated Metallopeptidase; M50 Family Metallopeptidase; S2P Family Metalloprotease

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGIYLNLVLILFMLVACTGLYIY
LGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNREEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQE
GAIFKGNLRGDIEKVYTKLSAKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG
GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGSFGSVNRFESILPNRKVLFDV
AFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASVLVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLM
PAGQLDGGRILQAIYGRKVAGRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF
AIATLFPLTPGLAGRLGIGS

Sequences:

>Translated_500_residues
MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGIYLNLVLILFMLVACTGLYIY
LGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNREEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQE
GAIFKGNLRGDIEKVYTKLSAKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG
GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGSFGSVNRFESILPNRKVLFDV
AFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASVLVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLM
PAGQLDGGRILQAIYGRKVAGRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF
AIATLFPLTPGLAGRLGIGS
>Mature_500_residues
MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGIYLNLVLILFMLVACTGLYIY
LGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNREEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQE
GAIFKGNLRGDIEKVYTKLSAKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG
GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGSFGSVNRFESILPNRKVLFDV
AFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASVLVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLM
PAGQLDGGRILQAIYGRKVAGRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF
AIATLFPLTPGLAGRLGIGS

Specific function: Unknown

COG id: COG0750

COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55003; Mature: 55003

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGI
CCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLNLVLILFMLVACTGLYIYLGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNR
HHHHHHHHHHHHHHHHHHEEECCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCH
EEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQEGAIFKGNLRGDIEKVYTKLS
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHEEEECCCCCCCCEEECCCCHHHHHHHHHHH
AKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG
HHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGS
CEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
FGSVNRFESILPNRKVLFDVAFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASV
CCCHHHHHHHCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHH
LVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLMPAGQLDGGRILQAIYGRKVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
GRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHH
AIATLFPLTPGLAGRLGIGS
HHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGI
CCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLNLVLILFMLVACTGLYIYLGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNR
HHHHHHHHHHHHHHHHHHEEECCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCH
EEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQEGAIFKGNLRGDIEKVYTKLS
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHEEEECCCCCCCCEEECCCCHHHHHHHHHHH
AKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG
HHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGS
CEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
FGSVNRFESILPNRKVLFDVAFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASV
CCCHHHHHHHCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHH
LVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLMPAGQLDGGRILQAIYGRKVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
GRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHH
AIATLFPLTPGLAGRLGIGS
HHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA