Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474292
Identifier: 113474292
GI number: 113474292
Start: 654900
End: 656402
Strand: Direct
Name: 113474292
Synonym: Tery_0417
Alternate gene names: NA
Gene position: 654900-656402 (Clockwise)
Preceding gene: 161485632
Following gene: 113474293
Centisome position: 8.45
GC content: 37.72
Gene sequence:
>1503_bases ATGTATACAACATCCGAAAATACGACTACAATAATAGTAGCTTTAATTGCTATGGGAATTCTGGGCTGGGGATACTACAG GGCTAGGCCTTATGGAAAAACTGGCATTTTAGGTTGGTTACAATCAGTAGTATTAATGACACCTTGGCTAGTGTTTTTTG TTCTATTTGCTGCGGGAATTTATCTGAATTTAGTATTGATTCTATTTATGTTAGTGGCTTGTACAGGATTGTACATCTAT TTGGGTTGGCAATTACGAATAATAGCAGCTCAAGAAACAGAAAATAAACCTGATATTAAACCTATTAGTAACTCCTTACA AGAGTCTTCTAGTGAAGAGAAAACTGAATTAGTAAATAGGGAAGAGAAAAAAGAAGAAACTCTAGAATTTCTTCCTATTT CCACTGAAGACTTACAAAAAGTAAAAGACATTTTTGGTATTGATACCTTTTTTATTACCGAAACTATCCCCTATCAAGAA GGAGCTATTTTCAAGGGTAATTTACGGGGAGATATAGAAAAGGTTTATACTAAATTATCAGCAAAATTGGCCGAAAAACT TGGCGATCGCTACAGACTATTTTTATTGGAAAGTCCAGAAGCTAAACCAGTAGTAATTCTTTTACCAAGCAAAAATGACC CATTACCTGCCACTACATCCCAAAAAATTCTGGCAGTTATTCTATTACTTGCGACTATTGCCACCAGTTTTGAAGCGGGT GGGTTATTGTTGGGGTTTGACTTTTTCAACCAACCCATGAGATATCAAGAAGCATTACCCATTGTAATTGGTCTGTGGAT AGTTTTGGGTGGTCACGAAATTGCTCACCAAGTTTTAGCAAAACTTCACAATGTTCGCTTTAGTTGGCCGTTTTTTCTGC CCGCTTGGCAAATTGGTAGTTTTGGTTCGGTTAACCGTTTCGAGTCAATACTCCCTAACCGAAAAGTTCTATTTGATGTG GCTTTTGCCGGACCTGCTGTTGGAGGAATAATTTCTTTGGCAATGCTATTAGGGGGTTTGTTACTTTCCCATGAAGGTAG TCTGTTTCAGATGCCATCAGAATTTTTTAAAGCTTCTGTTTTGGTAGGAACTTTAGCACGGGTGATTTTAGGTCCGGCAG TACATCAGAGTATAGTAGATATTCACCCACTAGCAATTATAGGTTGGTTGGGTTTAGTTATTACAGCAATTAATCTGATG CCAGCAGGTCAGTTAGATGGTGGTAGAATTCTGCAAGCAATTTATGGTCGGAAAGTGGCAGGTAGAGCAACATTATTTAC TTTTATAGTATTGGTATTTGCTTCTTTGGTTAATCCTTTGGCGTTGTATTGGGCGATTATTATTTTGGTATTACAGCGAA ATTTAGAACGGCCTTGTTTAAATGAATTGGTAGAACCGGATGATGGTCGGGCAGGTTTGTGTTTGTTGGCTTTATTTTTT GCGATCGCTACTTTGTTTCCTCTAACTCCAGGTTTAGCTGGTAGGTTGGGTATTGGTAGTTAA
Upstream 100 bases:
>100_bases AAACAAGGAAGCTATTTATTTCGAGAATAAAATAATTTTTCTATATATCTATAGGAAAACTATTACTTTTGACTTTTAAC TTTATACTCTCATATAGATT
Downstream 100 bases:
>100_bases TCTTGGGCTTACACAAGTCAAAAGTTAACCCTCCCCTACTCTTTTAGGGGGGGCTGTTTCTTTCTAAAATTTGTTGTCTA TTGAAGGTTTAGAAAAAAAT
Product: peptidase M50
Products: NA
Alternate protein names: Peptidase; M50 Family Peptidase; Membrane-Associated Zn-Dependent Protease; Metalloprotease; Zinc Metalloprotease; M50B Family Peptidase; Membrane-Associated Metallopeptidase; M50 Family Metallopeptidase; S2P Family Metalloprotease
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGIYLNLVLILFMLVACTGLYIY LGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNREEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQE GAIFKGNLRGDIEKVYTKLSAKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGSFGSVNRFESILPNRKVLFDV AFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASVLVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLM PAGQLDGGRILQAIYGRKVAGRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF AIATLFPLTPGLAGRLGIGS
Sequences:
>Translated_500_residues MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGIYLNLVLILFMLVACTGLYIY LGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNREEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQE GAIFKGNLRGDIEKVYTKLSAKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGSFGSVNRFESILPNRKVLFDV AFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASVLVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLM PAGQLDGGRILQAIYGRKVAGRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF AIATLFPLTPGLAGRLGIGS >Mature_500_residues MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGIYLNLVLILFMLVACTGLYIY LGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNREEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQE GAIFKGNLRGDIEKVYTKLSAKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGSFGSVNRFESILPNRKVLFDV AFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASVLVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLM PAGQLDGGRILQAIYGRKVAGRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF AIATLFPLTPGLAGRLGIGS
Specific function: Unknown
COG id: COG0750
COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55003; Mature: 55003
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGI CCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YLNLVLILFMLVACTGLYIYLGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNR HHHHHHHHHHHHHHHHHHEEECCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCH EEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQEGAIFKGNLRGDIEKVYTKLS HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHEEEECCCCCCCCEEECCCCHHHHHHHHHHH AKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG HHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGS CEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC FGSVNRFESILPNRKVLFDVAFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASV CCCHHHHHHHCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHH LVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLMPAGQLDGGRILQAIYGRKVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC GRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHH AIATLFPLTPGLAGRLGIGS HHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MYTTSENTTTIIVALIAMGILGWGYYRARPYGKTGILGWLQSVVLMTPWLVFFVLFAAGI CCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YLNLVLILFMLVACTGLYIYLGWQLRIIAAQETENKPDIKPISNSLQESSSEEKTELVNR HHHHHHHHHHHHHHHHHHEEECCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCH EEKKEETLEFLPISTEDLQKVKDIFGIDTFFITETIPYQEGAIFKGNLRGDIEKVYTKLS HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHEEEECCCCCCCCEEECCCCHHHHHHHHHHH AKLAEKLGDRYRLFLLESPEAKPVVILLPSKNDPLPATTSQKILAVILLLATIATSFEAG HHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC GLLLGFDFFNQPMRYQEALPIVIGLWIVLGGHEIAHQVLAKLHNVRFSWPFFLPAWQIGS CEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC FGSVNRFESILPNRKVLFDVAFAGPAVGGIISLAMLLGGLLLSHEGSLFQMPSEFFKASV CCCHHHHHHHCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHH LVGTLARVILGPAVHQSIVDIHPLAIIGWLGLVITAINLMPAGQLDGGRILQAIYGRKVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC GRATLFTFIVLVFASLVNPLALYWAIIILVLQRNLERPCLNELVEPDDGRAGLCLLALFF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHH AIATLFPLTPGLAGRLGIGS HHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA