Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474290
Identifier: 113474290
GI number: 113474290
Start: 650769
End: 652265
Strand: Reverse
Name: 113474290
Synonym: Tery_0415
Alternate gene names: NA
Gene position: 652265-650769 (Counterclockwise)
Preceding gene: 113474296
Following gene: 113474289
Centisome position: 8.42
GC content: 32.53
Gene sequence:
>1497_bases ATGATGCTTTTGCCACCACTTATTGTGAGCAGGATAATAATTCTAGCAACTTTAATTTTCTTTATCTGTAGTAGTTTACG TCACGCCTTCTTTTGCTCTACTGGGTTTGACTTGGGTATTTATGACCAAGTTGTATATTTGATTAGTCAAGGAAAATCTC CCATTTCTTCTTTTTTGGGATATCACCATTTGGGAAATCATGCTGCTTGGGCTGTCTATCCTTTAGGATTATTTTATATG ATTCATCCTGATATTCATTGGCTACTCTTACTACAAGCTGTATGTTTAGCCTTAGGAAGTTGGCCTACTTGGTGTTTGGC CAGATTAGCAGGGTTAAATCAAGGACAAGCAGTAGCGATCGCCATTTCCTATCTTTTATACCCAGTAATTTTTAATATTA ATTTATTTGATTTTCACCCAGAAGTAATGGCTTTACCTGCTATTTTAGGAGCAATTTTAGCAGCGAGACTAAAACGTGTT TTATGGTTTTGTATAGCTATTATTTGGGTATTAGGTTGTAAAGCAGTTTTATCATTAACTATAGTTTTTATGGGTTTCTG GTTACTCGCTTTTGAAAAACGTAAGTTTTGCGGTTTAATTGCTATTTTTTTAGGCATTTTATGGTTTATAGTTGTAACTC AAGGAATTATTCCTTTTTTCAGTGGTAAAGAAGTAGCTGGAGTCGGGCGTTATAGTTATCTGGGAGATTCTGTTGTGGGA ATTATAATTAATATTTTCCTACAACCAGGAGTAGTGTTAGGCAGAATATTATCTTGGGAAAGTATCAAATATATTTTTCT GTTATTTTTACCTGTAATTTGGGGAATATTTCCATTACTTCAGACAAATAAGGCTGTTTTACCTAATCTTATCCCTCTCA TTCCAACTATTCCGACAATTATCTTGAATGCTCTGTCTGAAGTATCATTTCAGAAAAGCTTAAATTATCAGTATTCTTTA CCTGCAATTAGTTTTTTATTATTAACAATAATTTCCTGTCTAGCAGCAGCTTCTGAAATAGAAAATCAAAGTATTCAGAT AAAATCAACTTGGATAATTAAGTTAGAAATTCCTAAATTTAATCTGAGATTACCAATACCAAATTTTCAATACCCCCGCA TAATTATTTTGTGGTCTACTTTAATATTTCTGTTGTTTGGTAATGTAGCCAGTTTATTTTCTTATCCTCGTAGCTTTGAT ACTTGGCAAGCTACCAATAATGCAATTACTTACATTAAAACTCAAGGTGGGGTACTCACAGATAATCGATTAGCACCTCA TTTTACTCATCGTTCAATGGTCAAGTTATTGAATCAAATAGAGCCAGATAATTTAGATGAATTCGATTATGTAGTTTTGA ATTTACGTCATCCCTGGCCAGATACTAAGGATACTGGTATTATCCTTTCTAAAAATCTCCAAAACAACCAAGAATGGGAA TTAAGTTATCAAAAAAATGATGTAATAGTATTTCAAAGAAAAGAATTCAAAAGTTAA
Upstream 100 bases:
>100_bases ATAATTGATAAAGTATAAATACTTATAGAGTCGCCAGTTTTTGTACTTTGTGCTACTTTTTCTGTTACAAATTGACTTGG GGAACGTGGGACTTAAAAAT
Downstream 100 bases:
>100_bases AAGTTAAAATTTAAAATTTAAAATTTAAAATTTATCTTTGAAAAAAAACAAGGCTGCTAAAAAAATAGTTTTTAGTATGC CTTAATTCCTAAGATATATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MMLLPPLIVSRIIILATLIFFICSSLRHAFFCSTGFDLGIYDQVVYLISQGKSPISSFLGYHHLGNHAAWAVYPLGLFYM IHPDIHWLLLLQAVCLALGSWPTWCLARLAGLNQGQAVAIAISYLLYPVIFNINLFDFHPEVMALPAILGAILAARLKRV LWFCIAIIWVLGCKAVLSLTIVFMGFWLLAFEKRKFCGLIAIFLGILWFIVVTQGIIPFFSGKEVAGVGRYSYLGDSVVG IIINIFLQPGVVLGRILSWESIKYIFLLFLPVIWGIFPLLQTNKAVLPNLIPLIPTIPTIILNALSEVSFQKSLNYQYSL PAISFLLLTIISCLAAASEIENQSIQIKSTWIIKLEIPKFNLRLPIPNFQYPRIIILWSTLIFLLFGNVASLFSYPRSFD TWQATNNAITYIKTQGGVLTDNRLAPHFTHRSMVKLLNQIEPDNLDEFDYVVLNLRHPWPDTKDTGIILSKNLQNNQEWE LSYQKNDVIVFQRKEFKS
Sequences:
>Translated_498_residues MMLLPPLIVSRIIILATLIFFICSSLRHAFFCSTGFDLGIYDQVVYLISQGKSPISSFLGYHHLGNHAAWAVYPLGLFYM IHPDIHWLLLLQAVCLALGSWPTWCLARLAGLNQGQAVAIAISYLLYPVIFNINLFDFHPEVMALPAILGAILAARLKRV LWFCIAIIWVLGCKAVLSLTIVFMGFWLLAFEKRKFCGLIAIFLGILWFIVVTQGIIPFFSGKEVAGVGRYSYLGDSVVG IIINIFLQPGVVLGRILSWESIKYIFLLFLPVIWGIFPLLQTNKAVLPNLIPLIPTIPTIILNALSEVSFQKSLNYQYSL PAISFLLLTIISCLAAASEIENQSIQIKSTWIIKLEIPKFNLRLPIPNFQYPRIIILWSTLIFLLFGNVASLFSYPRSFD TWQATNNAITYIKTQGGVLTDNRLAPHFTHRSMVKLLNQIEPDNLDEFDYVVLNLRHPWPDTKDTGIILSKNLQNNQEWE LSYQKNDVIVFQRKEFKS >Mature_498_residues MMLLPPLIVSRIIILATLIFFICSSLRHAFFCSTGFDLGIYDQVVYLISQGKSPISSFLGYHHLGNHAAWAVYPLGLFYM IHPDIHWLLLLQAVCLALGSWPTWCLARLAGLNQGQAVAIAISYLLYPVIFNINLFDFHPEVMALPAILGAILAARLKRV LWFCIAIIWVLGCKAVLSLTIVFMGFWLLAFEKRKFCGLIAIFLGILWFIVVTQGIIPFFSGKEVAGVGRYSYLGDSVVG IIINIFLQPGVVLGRILSWESIKYIFLLFLPVIWGIFPLLQTNKAVLPNLIPLIPTIPTIILNALSEVSFQKSLNYQYSL PAISFLLLTIISCLAAASEIENQSIQIKSTWIIKLEIPKFNLRLPIPNFQYPRIIILWSTLIFLLFGNVASLFSYPRSFD TWQATNNAITYIKTQGGVLTDNRLAPHFTHRSMVKLLNQIEPDNLDEFDYVVLNLRHPWPDTKDTGIILSKNLQNNQEWE LSYQKNDVIVFQRKEFKS
Specific function: Unknown
COG id: COG3463
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56456; Mature: 56456
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLLPPLIVSRIIILATLIFFICSSLRHAFFCSTGFDLGIYDQVVYLISQGKSPISSFLG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH YHHLGNHAAWAVYPLGLFYMIHPDIHWLLLLQAVCLALGSWPTWCLARLAGLNQGQAVAI HHHCCCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHH AISYLLYPVIFNINLFDFHPEVMALPAILGAILAARLKRVLWFCIAIIWVLGCKAVLSLT HHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVFMGFWLLAFEKRKFCGLIAIFLGILWFIVVTQGIIPFFSGKEVAGVGRYSYLGDSVVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH IIINIFLQPGVVLGRILSWESIKYIFLLFLPVIWGIFPLLQTNKAVLPNLIPLIPTIPTI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH ILNALSEVSFQKSLNYQYSLPAISFLLLTIISCLAAASEIENQSIQIKSTWIIKLEIPKF HHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCE NLRLPIPNFQYPRIIILWSTLIFLLFGNVASLFSYPRSFDTWQATNNAITYIKTQGGVLT EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEE DNRLAPHFTHRSMVKLLNQIEPDNLDEFDYVVLNLRHPWPDTKDTGIILSKNLQNNQEWE CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCEE LSYQKNDVIVFQRKEFKS EEECCCCEEEEECCCCCC >Mature Secondary Structure MMLLPPLIVSRIIILATLIFFICSSLRHAFFCSTGFDLGIYDQVVYLISQGKSPISSFLG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH YHHLGNHAAWAVYPLGLFYMIHPDIHWLLLLQAVCLALGSWPTWCLARLAGLNQGQAVAI HHHCCCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHH AISYLLYPVIFNINLFDFHPEVMALPAILGAILAARLKRVLWFCIAIIWVLGCKAVLSLT HHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVFMGFWLLAFEKRKFCGLIAIFLGILWFIVVTQGIIPFFSGKEVAGVGRYSYLGDSVVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH IIINIFLQPGVVLGRILSWESIKYIFLLFLPVIWGIFPLLQTNKAVLPNLIPLIPTIPTI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH ILNALSEVSFQKSLNYQYSLPAISFLLLTIISCLAAASEIENQSIQIKSTWIIKLEIPKF HHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCE NLRLPIPNFQYPRIIILWSTLIFLLFGNVASLFSYPRSFDTWQATNNAITYIKTQGGVLT EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEE DNRLAPHFTHRSMVKLLNQIEPDNLDEFDYVVLNLRHPWPDTKDTGIILSKNLQNNQEWE CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCEE LSYQKNDVIVFQRKEFKS EEECCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA