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The map label for this gene is ydeP [H]

Identifier: 113474281

GI number: 113474281

Start: 631426

End: 633651

Strand: Direct

Name: ydeP [H]

Synonym: Tery_0404

Alternate gene names: 113474281

Gene position: 631426-633651 (Clockwise)

Preceding gene: 113474280

Following gene: 113474283

Centisome position: 8.15

GC content: 39.49

Gene sequence:

>2226_bases
ATGTTACCCAAACCAAACAAAATCTGGAACCCAAAAATATGGGCAAGCTGGAAACCCTTCGGTATAGGGGAACAATACCC
CAATAACTACTGGGAACTTATCCGCGCTGGAATAGAAAATATCGACCAACTTCCTTATGCCTGGAACATACTCAACAAAG
GGGTTTGCGATGGTTGTTCCTTAGGTACAACTGGCATGAAAGACTGGACTCTTGATGGTTTTCATTTATGTAATGTCCGC
CTCCGACTATTGCGCCTGAATACTATGCCAGCATTTAACCCAGAAATATTGGCGAATATTTCTCAACTCCAAAATAAAAG
CAGTGGAGACCTTCTCCAAATGGGGCGACTACCTTACCCCATGCGCCGCGATAAAGGTGACAAAGGGTTTCGACGAATTA
GTTGGGATGAAGCAATGGCAGTAATTAGCGATCGCCTTAAAACTACCCACCCAGACCGTATAGGTTTCTACCTTACCAGT
CGTGGTACTGTTAATGAAACTTATTATGCTACTCAAAAAGCTGCACGGGCGATCGGTACTAATAATATTGATAACGCTGC
GCGCATTTGTCATTCCCCTAGTACTGGAGCATTGAAAACTACTATTGGTGCTGCTGCTACTACCTGTTCCTACAAAGACT
GGATAGGTACAGACTTATTGGTATTCATCGGTTCTAATGTAGCAAATAATCAACCTGTTACAGTTAAATATTTGCACTGG
GCTAAAAAAGCAGGCACAAAAATTGTTGTTATTAACACTTACCGGGAACCGGGGATGGAGCGTTATTGGGTACCATCTAT
TCCAGAGAGTGCTTTATTTGGAACTAAATTTGCGGAAGATTTCTTTTTAGTTAATGTCAATGGGGATATGGCATTTATCA
ATGGTACCATTAAACATTTAATTGCTAATGACTGGATAGATAAACATTTTATAGATAATTATACTAATCAGTTTGAGGAA
TTAAAGGCTTCATTAGATGCCCAGTCTTGGTCAGAATTAGAACGCTTTTCTGGAAGCACTCAGGATGAAATGTATGCCTT
TGCTAAAATGGTTGGGAAAGCAAAAAAAGCAGTCTTTGTTTGGAGTATGGGAATTACTCAACATGAGTGTGGGGAAGATA
ATGTTAGGGCTATTATTAATTTAGCTTTGACTAAAGGTTTTGTTGGTAGAGAAGGCTGTGGTTTAATGCCAATTCGGGGT
CATTCTGGGGTGCAGGGTGGAGCAGAAATGGGATGTTATTCTACAGTGTTTCCTGGAGGGAGAAAAATTAATCCTGAAAA
TGCTGAGGTGATGAGTAAATTTTGGGGTTTTTCTGTGCCGAATAATCCTGGTTTAACTACTTCAGAAATGATTGATAATG
CTTCAGAAGGAAAGTTAGATGTTTTGTTTTCTGTAGGGGGCAATTTTTTAGAAGTTTTGCCAGATCCAGATTATGTAAAA
GCTGCTATGAAACGGGTACCTTTGCGAGTACATCAGGATATTATTTGCTCTAATCAAATGTTAGTTGAACCTGGAGAAAC
AGTAATATTATTACCTACTACAACTCGTTATGAAATTCCAGGAGGGGTGACAGAAACTACTACGGAAAGAAGGGTGATAT
TTAGCCCGGAAGTTCCTGGTCAAAGAATTGGGGAGGCTCGCCCTGAGTGGCAGGTATTTATGGATTTAGCAAAGTTAGTC
CGTCCAGAATTAGCTGATAAGTTAGAGTTTAAAAATACTGGGGAAATTCGTCAGGAAATTGCTTTGGTAATTTCTCAATA
TTCGGGTATTCAACATTTAAAAGAACCTGGAGATAATTTTCAATATGGGGGTGCTCATTTATGTTTTGGCTGGAATTTTC
CCACACCTGACAAGAAGGCGAAATTTTCCATACTTTCTCCACCAAAAGAGGAGTTATCAAAGGGCTATTTTTTAGTGGCA
ACTCGACGAGGTAAACAGTTTAATAGTATGGTGCAGTCTCAGAAAGATGCGATTACTGGTGCTTTACGAGAAGCGATTTT
AATTAATCCTTTTGATGCTCAAGAATTAGGGTTGAAAGATGGAGATAATGTGCGGTTAAAAAATGATTTTGGTTTGTTTT
CTGGGAAGGTGTTTTTAGCTCCGATGAAACCTGGTAATTTACAAGTACATTGGCCGGAGGGAAATGTGTTATTGGATAAG
GGTAAACGTTCTGTTGAAGGTGTGCCTGATTATAATGCTTTAGTCTGTTTAGAAAAGTTGGGTTAA

Upstream 100 bases:

>100_bases
ACTTAGTATCTAAGATTAAATTTATATAAAAATTAGGACAAACACAAATTTATATCTAGTATTTTTTAAAGAAAAAACTA
TTTTTTTGAGAAAATAAATT

Downstream 100 bases:

>100_bases
GTTATTTTTTTTAGAGTATTGAATTTGAGATTTTTATCATCGCATTATTTAATTGATTAGATAATAATAATTGATAAAAT
TTAGAGAGATTCTAATCTTA

Product: oxidoreductase alpha (molybdopterin) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 741; Mature: 741

Protein sequence:

>741_residues
MLPKPNKIWNPKIWASWKPFGIGEQYPNNYWELIRAGIENIDQLPYAWNILNKGVCDGCSLGTTGMKDWTLDGFHLCNVR
LRLLRLNTMPAFNPEILANISQLQNKSSGDLLQMGRLPYPMRRDKGDKGFRRISWDEAMAVISDRLKTTHPDRIGFYLTS
RGTVNETYYATQKAARAIGTNNIDNAARICHSPSTGALKTTIGAAATTCSYKDWIGTDLLVFIGSNVANNQPVTVKYLHW
AKKAGTKIVVINTYREPGMERYWVPSIPESALFGTKFAEDFFLVNVNGDMAFINGTIKHLIANDWIDKHFIDNYTNQFEE
LKASLDAQSWSELERFSGSTQDEMYAFAKMVGKAKKAVFVWSMGITQHECGEDNVRAIINLALTKGFVGREGCGLMPIRG
HSGVQGGAEMGCYSTVFPGGRKINPENAEVMSKFWGFSVPNNPGLTTSEMIDNASEGKLDVLFSVGGNFLEVLPDPDYVK
AAMKRVPLRVHQDIICSNQMLVEPGETVILLPTTTRYEIPGGVTETTTERRVIFSPEVPGQRIGEARPEWQVFMDLAKLV
RPELADKLEFKNTGEIRQEIALVISQYSGIQHLKEPGDNFQYGGAHLCFGWNFPTPDKKAKFSILSPPKEELSKGYFLVA
TRRGKQFNSMVQSQKDAITGALREAILINPFDAQELGLKDGDNVRLKNDFGLFSGKVFLAPMKPGNLQVHWPEGNVLLDK
GKRSVEGVPDYNALVCLEKLG

Sequences:

>Translated_741_residues
MLPKPNKIWNPKIWASWKPFGIGEQYPNNYWELIRAGIENIDQLPYAWNILNKGVCDGCSLGTTGMKDWTLDGFHLCNVR
LRLLRLNTMPAFNPEILANISQLQNKSSGDLLQMGRLPYPMRRDKGDKGFRRISWDEAMAVISDRLKTTHPDRIGFYLTS
RGTVNETYYATQKAARAIGTNNIDNAARICHSPSTGALKTTIGAAATTCSYKDWIGTDLLVFIGSNVANNQPVTVKYLHW
AKKAGTKIVVINTYREPGMERYWVPSIPESALFGTKFAEDFFLVNVNGDMAFINGTIKHLIANDWIDKHFIDNYTNQFEE
LKASLDAQSWSELERFSGSTQDEMYAFAKMVGKAKKAVFVWSMGITQHECGEDNVRAIINLALTKGFVGREGCGLMPIRG
HSGVQGGAEMGCYSTVFPGGRKINPENAEVMSKFWGFSVPNNPGLTTSEMIDNASEGKLDVLFSVGGNFLEVLPDPDYVK
AAMKRVPLRVHQDIICSNQMLVEPGETVILLPTTTRYEIPGGVTETTTERRVIFSPEVPGQRIGEARPEWQVFMDLAKLV
RPELADKLEFKNTGEIRQEIALVISQYSGIQHLKEPGDNFQYGGAHLCFGWNFPTPDKKAKFSILSPPKEELSKGYFLVA
TRRGKQFNSMVQSQKDAITGALREAILINPFDAQELGLKDGDNVRLKNDFGLFSGKVFLAPMKPGNLQVHWPEGNVLLDK
GKRSVEGVPDYNALVCLEKLG
>Mature_741_residues
MLPKPNKIWNPKIWASWKPFGIGEQYPNNYWELIRAGIENIDQLPYAWNILNKGVCDGCSLGTTGMKDWTLDGFHLCNVR
LRLLRLNTMPAFNPEILANISQLQNKSSGDLLQMGRLPYPMRRDKGDKGFRRISWDEAMAVISDRLKTTHPDRIGFYLTS
RGTVNETYYATQKAARAIGTNNIDNAARICHSPSTGALKTTIGAAATTCSYKDWIGTDLLVFIGSNVANNQPVTVKYLHW
AKKAGTKIVVINTYREPGMERYWVPSIPESALFGTKFAEDFFLVNVNGDMAFINGTIKHLIANDWIDKHFIDNYTNQFEE
LKASLDAQSWSELERFSGSTQDEMYAFAKMVGKAKKAVFVWSMGITQHECGEDNVRAIINLALTKGFVGREGCGLMPIRG
HSGVQGGAEMGCYSTVFPGGRKINPENAEVMSKFWGFSVPNNPGLTTSEMIDNASEGKLDVLFSVGGNFLEVLPDPDYVK
AAMKRVPLRVHQDIICSNQMLVEPGETVILLPTTTRYEIPGGVTETTTERRVIFSPEVPGQRIGEARPEWQVFMDLAKLV
RPELADKLEFKNTGEIRQEIALVISQYSGIQHLKEPGDNFQYGGAHLCFGWNFPTPDKKAKFSILSPPKEELSKGYFLVA
TRRGKQFNSMVQSQKDAITGALREAILINPFDAQELGLKDGDNVRLKNDFGLFSGKVFLAPMKPGNLQVHWPEGNVLLDK
GKRSVEGVPDYNALVCLEKLG

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=667, Percent_Identity=27.2863568215892, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI3868721, Length=592, Percent_Identity=28.2094594594595, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI3868720, Length=445, Percent_Identity=24.4943820224719, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI3868719, Length=378, Percent_Identity=24.0740740740741, Blast_Score=115, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 82636; Mature: 82636

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPKPNKIWNPKIWASWKPFGIGEQYPNNYWELIRAGIENIDQLPYAWNILNKGVCDGCS
CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
LGTTGMKDWTLDGFHLCNVRLRLLRLNTMPAFNPEILANISQLQNKSSGDLLQMGRLPYP
CCCCCCCCCCCCCEEECCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCC
MRRDKGDKGFRRISWDEAMAVISDRLKTTHPDRIGFYLTSRGTVNETYYATQKAARAIGT
CCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
NNIDNAARICHSPSTGALKTTIGAAATTCSYKDWIGTDLLVFIGSNVANNQPVTVKYLHW
CCCCHHHHHHCCCCCCCHHHHHCHHHHCCCCHHHCCCEEEEEECCCCCCCCCEEEEEEEH
AKKAGTKIVVINTYREPGMERYWVPSIPESALFGTKFAEDFFLVNVNGDMAFINGTIKHL
HHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHCCCCCCCEEEEEECCCEEEEHHHHHHH
IANDWIDKHFIDNYTNQFEELKASLDAQSWSELERFSGSTQDEMYAFAKMVGKAKKAVFV
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEE
WSMGITQHECGEDNVRAIINLALTKGFVGREGCGLMPIRGHSGVQGGAEMGCYSTVFPGG
EECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCC
RKINPENAEVMSKFWGFSVPNNPGLTTSEMIDNASEGKLDVLFSVGGNFLEVLPDPDYVK
CEECCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEECCCCHHHH
AAMKRVPLRVHQDIICSNQMLVEPGETVILLPTTTRYEIPGGVTETTTERRVIFSPEVPG
HHHHHCCHHHHHHHHHCCCEEECCCCEEEEEECCCEEECCCCCCCCCCCCEEEECCCCCH
QRIGEARPEWQVFMDLAKLVRPELADKLEFKNTGEIRQEIALVISQYSGIQHLKEPGDNF
HHHCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCC
QYGGAHLCFGWNFPTPDKKAKFSILSPPKEELSKGYFLVATRRGKQFNSMVQSQKDAITG
CCCCEEEEEECCCCCCCCCCEEEECCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
ALREAILINPFDAQELGLKDGDNVRLKNDFGLFSGKVFLAPMKPGNLQVHWPEGNVLLDK
HHHHHEEECCCCHHHCCCCCCCCEEEECCCCEEECEEEEEECCCCCEEEECCCCCEEEEC
GKRSVEGVPDYNALVCLEKLG
CCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MLPKPNKIWNPKIWASWKPFGIGEQYPNNYWELIRAGIENIDQLPYAWNILNKGVCDGCS
CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
LGTTGMKDWTLDGFHLCNVRLRLLRLNTMPAFNPEILANISQLQNKSSGDLLQMGRLPYP
CCCCCCCCCCCCCEEECCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCC
MRRDKGDKGFRRISWDEAMAVISDRLKTTHPDRIGFYLTSRGTVNETYYATQKAARAIGT
CCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
NNIDNAARICHSPSTGALKTTIGAAATTCSYKDWIGTDLLVFIGSNVANNQPVTVKYLHW
CCCCHHHHHHCCCCCCCHHHHHCHHHHCCCCHHHCCCEEEEEECCCCCCCCCEEEEEEEH
AKKAGTKIVVINTYREPGMERYWVPSIPESALFGTKFAEDFFLVNVNGDMAFINGTIKHL
HHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHCCCCCCCEEEEEECCCEEEEHHHHHHH
IANDWIDKHFIDNYTNQFEELKASLDAQSWSELERFSGSTQDEMYAFAKMVGKAKKAVFV
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEE
WSMGITQHECGEDNVRAIINLALTKGFVGREGCGLMPIRGHSGVQGGAEMGCYSTVFPGG
EECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCC
RKINPENAEVMSKFWGFSVPNNPGLTTSEMIDNASEGKLDVLFSVGGNFLEVLPDPDYVK
CEECCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEECCCCHHHH
AAMKRVPLRVHQDIICSNQMLVEPGETVILLPTTTRYEIPGGVTETTTERRVIFSPEVPG
HHHHHCCHHHHHHHHHCCCEEECCCCEEEEEECCCEEECCCCCCCCCCCCEEEECCCCCH
QRIGEARPEWQVFMDLAKLVRPELADKLEFKNTGEIRQEIALVISQYSGIQHLKEPGDNF
HHHCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCC
QYGGAHLCFGWNFPTPDKKAKFSILSPPKEELSKGYFLVATRRGKQFNSMVQSQKDAITG
CCCCEEEEEECCCCCCCCCCEEEECCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
ALREAILINPFDAQELGLKDGDNVRLKNDFGLFSGKVFLAPMKPGNLQVHWPEGNVLLDK
HHHHHEEECCCCHHHCCCCCCCCEEEECCCCEEECEEEEEECCCCCEEEECCCCCEEEEC
GKRSVEGVPDYNALVCLEKLG
CCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]